Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00363
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.48 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 67  DGEXVEFAVVAGEKGFEAAGVTGPGGEPV 153
           DG+ V    VA E GF+  G   P   P+
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPI 109


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 389 WPNE*RRVPPSASAQFPGGAGRTKSGSAP 475
           W N+      S S  +PGG   + S S+P
Sbjct: 68  WFNDSAAAITSTSPSYPGGGSSSPSPSSP 96


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 540 LLGLAPCCWFEL 505
           ++G  PCCW+++
Sbjct: 482 MIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 540 LLGLAPCCWFEL 505
           ++G  PCCW+++
Sbjct: 535 MIGYYPCCWWKI 546


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 585 LSLVVVSIVVPTGLLLL 535
           LSLVVV++ + TG  LL
Sbjct: 62  LSLVVVTVAISTGEWLL 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,976
Number of Sequences: 438
Number of extensions: 3087
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)