Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00363
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /...    29   2.1  
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ...    28   4.8  
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    28   4.8  
At1g03990.1 68414.m00385 alcohol oxidase-related low similarity ...    28   4.8  
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ...    28   6.3  
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr...    27   8.3  
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr...    27   8.3  
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr...    27   8.3  

>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
           glycine-rich protein (GRP2) identical to Glycine-rich
           protein 2b (AtGRP2b) [Arabidopsis thaliana]
           SWISS-PROT:Q38896; contains Pfam domains PF00313:
           'Cold-shock' DNA-binding domain and PF00098: Zinc
           knuckle
          Length = 201

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 10  VHQTAIARNNPRKAVRSVGDGEXVEFAVVAGEKGF-EAAGVTGPGGEPVKGS 162
           VHQ++I      +  RS+   E VEF V     G  +A  V+GP G PV+G+
Sbjct: 42  VHQSSIRS----EGFRSLAAEESVEFDVEVDNSGRPKAIEVSGPDGAPVQGN 89


>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
          MtN3 GI:1619602 (root nodule development) from
          [Medicago truncatula]
          Length = 294

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 26 SPVTTHVRLCARSATERXWSLPWL 97
          +PV T VR+C + +TE   SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 10  VHQTAIARNNPRKAVRSVGDGEXVEFAV-VAGEKGFEAAGVTGPGGEPVKGS 162
           VHQ++I      +  RS+   E VEF V +      +A  V+GP G PV+G+
Sbjct: 38  VHQSSIRS----EGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGPDGAPVQGN 85


>At1g03990.1 68414.m00385 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]; Location
           of EST 248L9T7, gb|AA713296
          Length = 758

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 550 RFVTFRLGPLLLV*VVAEASPSWPF 476
           R +TFRLG LLL  +V      WPF
Sbjct: 105 RILTFRLGTLLLCGLVCLDKKHWPF 129


>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
           cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
           Pinus taeda [GI:17978649]; contains non-consensus GG
           acceptor splice site at exon 4
          Length = 317

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 365 AKIATEKTALRWYNASFLTLISLCTPLV 282
           AK  TE+ AL W   +F  +++LC  ++
Sbjct: 158 AKTLTEREALEWSKRNFADVVTLCPSVI 185


>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 109 GFEAAGVTGPGGEPVKGSPYAADKXRGYHRQYFP 210
           G E+ G+TG G EPVK       K RG  R+Y P
Sbjct: 82  GGESGGMTGTGSEPVK-------KRRGRPRKYGP 108


>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 109 GFEAAGVTGPGGEPVKGSPYAADKXRGYHRQYFP 210
           G E+ G+TG G EPVK       K RG  R+Y P
Sbjct: 82  GGESGGMTGTGSEPVK-------KRRGRPRKYGP 108


>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
           protein 1 (AHP1) identical to AT-hook protein 1
           [Arabidopsis thaliana] gi|2598227|emb|CAA10857
          Length = 351

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 109 GFEAAGVTGPGGEPVKGSPYAADKXRGYHRQYFP 210
           G E+ G+TG G EPVK       K RG  R+Y P
Sbjct: 82  GGESGGMTGTGSEPVK-------KRRGRPRKYGP 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,509
Number of Sequences: 28952
Number of extensions: 225455
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)