Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00362
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    30   0.35 
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   3.2  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   3.2  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   3.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   5.6  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.5  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   7.5  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   9.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   9.9  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 76  LVLHDLASFYQYISQAAVFTNHVLCEAF 159
           +V+ DLAS   +I Q A FT+ V CEA+
Sbjct: 704 MVVEDLASKLDHIVQLAGFTDPVYCEAY 731


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 248 GQVLKVNGNGTRTLNWSILQHFSLEFMECGTSTYL 352
           G  + +NG  T  ++W+ L+   + ++ C T+ YL
Sbjct: 243 GNFVTINGPCTTYMHWTPLKGQKMHYIVCDTNGYL 277


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +1

Query: 271 KWDENIELEYTSAFFTGVYGMWNIYIFALLVLYAPSHKQWPAVEDTSDTQNLSEEIEFTP 450
           K ++NIE E      +GVYG   + +   +     + ++    E   + +    E+EF  
Sbjct: 156 KLEKNIEKELVKRLKSGVYGDQPLNVNEEIWNKVLAAREGLIDEGEEEEEREEAELEFVS 215

Query: 451 LQERSSEISSLTSFL 495
             E   EIS L  +L
Sbjct: 216 DDEDEEEISDLEDWL 230


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 503 AFLRNEVRDEISLDRSCNGVNSISS 429
           +F+ ++V DEIS+D  C  V  ISS
Sbjct: 91  SFVLSDVMDEISIDTKCKIVLQISS 115


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 596  KKLV*KISHFK-SQ*YKANKSIKAVIQSSIIVAFLRNEVRDEISLDRSCNGVNSIS 432
            K+L+  I  F+  Q    N  +  +I+   ++  +++E    +SLD S NG+N  S
Sbjct: 883  KELISSIDFFEYEQDEILNDVVGFMIEDEYVIVAVQDEEGTSLSLDVSINGLNFAS 938


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 262 GQWKWDENIELEYTSAFFTGVYG 330
           GQ+ W  NIEL+  S   TG  G
Sbjct: 171 GQFLWAHNIELDKLSIMKTGAVG 193


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +1

Query: 226 DYNRIYIGTSAEGQWKWDENIELEY 300
           D+N+I+   ++  +W W E++  +Y
Sbjct: 339 DFNKIWKNQASMNEWDWAESVLRQY 363


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 62  IYFLFLCYMIWQVFINISHKRQSLPTM 142
           +Y +F+C    +V +++   R SLP++
Sbjct: 656 LYLMFICIKTLKVIVDLREFRSSLPSI 682


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 226 DYNRIYIGTSAEGQWKWDEN 285
           DY RI +  S + QW WDEN
Sbjct: 161 DY-RIVLRESTDLQWFWDEN 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,037
Number of Sequences: 5004
Number of extensions: 57442
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)