Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00362
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0021 - 12521013-12521116,12521476-12521533,12522418-125225...    29   4.4  
05_03_0612 - 16177362-16178102,16178404-16178539,16180612-161806...    28   7.7  

>07_03_0021 -
           12521013-12521116,12521476-12521533,12522418-12522525,
           12522609-12522702,12522875-12523035,12523095-12523169,
           12523431-12523490,12523589-12523648,12523935-12523982,
           12524065-12524113,12524368-12524432,12524522-12524605,
           12524710-12524729,12524777-12524801,12524993-12525052,
           12525130-12525211,12525344-12525447,12525662-12525723,
           12525840-12525996
          Length = 491

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 278 TRTLNWSILQHFSLEFMECGTSTYLHCWFCMLRVT 382
           T TLN  I+ HF L  + C T   L  WF  +  T
Sbjct: 88  TETLNKDIISHFVLRLVYCRTEE-LRKWFLSMETT 121


>05_03_0612 -
           16177362-16178102,16178404-16178539,16180612-16180658,
           16181002-16181082,16181765-16181846,16181924-16182036,
           16182349-16182456,16182531-16182642,16182738-16182847,
           16183105-16183242,16183370-16183834
          Length = 710

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 47  GISTGIYFLFLCYMIWQVFINISHKRQSLPTMCSVRRLHYEGI 175
           G   G Y L+  ++I  VF+  SH   +LP  C V   H  G+
Sbjct: 113 GHDPGAYALWHWHLI-DVFVYFSHYLVTLPPPCWVNAAHLHGV 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,047,726
Number of Sequences: 37544
Number of extensions: 313851
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)