Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00362
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   6e-13
SB_38171| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.017
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)                   29   2.6  
SB_59351| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 28   6.0  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_1139| Best HMM Match : wnt (HMM E-Value=0)                          28   6.0  

>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 35/75 (46%), Positives = 43/75 (57%)
 Frame = +2

Query: 32  FIILAGISTGIYFLFLCYMIWQVFINISHKRQSLPTMCSVRRLHYEGIIYRFKFXXXXXX 211
           FII AGI   +YFLFLC M+ +VF NI  KR +   M   RRLHYEG+IYRF+F      
Sbjct: 306 FIICAGICACVYFLFLCVMVIKVFWNIRGKRATFAKMSRARRLHYEGLIYRFEFLMVITL 365

Query: 212 XXXXXXIIGFTLGQV 256
                 +I F +  V
Sbjct: 366 LCAALTVIFFVISNV 380



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
 Frame = +1

Query: 208 IAVCCTDYNRIY--IGTSAEGQWKW-DENIELEYTSAFFTGVYGMWNIYIFALLVLYAPS 378
           I + C     I+  I    E QWK+  E   +E +SA FTG+YGMWN Y+  L+ LYAPS
Sbjct: 363 ITLLCAALTVIFFVISNVNEAQWKFGSEESTVEISSALFTGIYGMWNTYVLTLMYLYAPS 422

Query: 379 HKQWPA-VEDTSDTQNLSEE 435
              + A   ++ DT  L+ E
Sbjct: 423 TGDFAAGYNESRDTVELTGE 442


>SB_38171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 307 AFFTGVYGMWNIYIFALLVLYAP 375
           A  TG+YGMWN Y+  L+ LY P
Sbjct: 2   ALDTGIYGMWNTYVLTLMYLYEP 24


>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1607

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 199  AGYIAVCCTDYNRIYIGT-SAEGQWK--WDENIELEYTSAFFTGV 324
            AG++ +   D NR Y+G  SAE  W+   DE   +++   F  G+
Sbjct: 1000 AGFVMIGSPDLNRKYVGVDSAEVHWRNFRDEESGIDFCDVFIDGL 1044


>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
          Length = 1699

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 199  AGYIAVCCTDYNRIYIGT-SAEGQWK--WDENIELEYTSAFFTGV 324
            AG++ +   D NR Y+G  SAE  W+   DE   +++   F  G+
Sbjct: 946  AGFVMIGSPDLNRKYVGVDSAEVHWRNFRDEESGIDFCDVFIDGL 990


>SB_59351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -3

Query: 462 PLLQWSKFNF---LAQILCIRCILNGWPLLVTRSIQ-NQQCKY 346
           PLL + + N    LA I+C  C+++G  + ++ S++   QCKY
Sbjct: 16  PLLVFKRTNLQRILADIMCASCLISGEMMKMSSSLRTGGQCKY 58


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 125 QSLPTMCSVRRLHYEGIIYRFKF 193
           +SL T+   R +HY G++YR +F
Sbjct: 306 KSLQTLMDSRPVHYNGVVYRNRF 328


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 364  LYAPSHKQWPAVEDTSDTQNLSEEIEFTPLQE 459
            +Y P +KQW    D+   QN  +  +  P Q+
Sbjct: 1244 MYCPQYKQWGRCSDSWTRQNCQKSCDLCPQQQ 1275


>SB_1139| Best HMM Match : wnt (HMM E-Value=0)
          Length = 500

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 494 RNEVRDEISLDRSCNGVNSISSLKFCVSDVSS 399
           R  V+  +SLD  C+GV+   S++ C   +SS
Sbjct: 330 RRVVKTNMSLDCKCHGVSGSCSVRTCWKSISS 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,352,911
Number of Sequences: 59808
Number of extensions: 398122
Number of successful extensions: 996
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)