Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00362
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical pr...    62   5e-10
U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine rece...    29   3.0  
AL590342-3|CAC35860.1|  421|Caenorhabditis elegans Hypothetical ...    27   9.1  
AL110477-4|CAB54328.1|  309|Caenorhabditis elegans Hypothetical ...    27   9.1  
AL032622-5|CAA21500.1|  421|Caenorhabditis elegans Y66A7A.6 prot...    27   9.1  
AF031842-1|AAC13678.1|  421|Caenorhabditis elegans GLY8 protein.       27   9.1  

>Z83237-6|CAE17879.1|  549|Caenorhabditis elegans Hypothetical
           protein R06B9.6 protein.
          Length = 549

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 31/69 (44%), Positives = 44/69 (63%)
 Frame = +1

Query: 301 TSAFFTGVYGMWNIYIFALLVLYAPSHKQWPAVEDTSDTQNLSEEIEFTPLQERSSEISS 480
           TSAFFTG +GM NIY+  LL +YAPSHK +       D +N  +EI   P   + +E ++
Sbjct: 482 TSAFFTGAFGMCNIYVLLLLAMYAPSHKHYRGASQLID-ENDDDEIMEDP-SNQHTESNA 539

Query: 481 LTSFLKKAT 507
           +T+FLK +T
Sbjct: 540 MTTFLKPST 548



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = +2

Query: 11  GTNLALTFIILAGISTGIYFLFLCYMIWQVFINISHKRQSLPTMCSV-RRLHYEGIIYRF 187
           G+ +A   I ++ IST  YF+FL + I +V+  I  KR +     S  RRL  EG+IYRF
Sbjct: 381 GSQIAYFAIFISAISTVAYFIFLFFKIARVWSTIKSKRSAQIYQTSENRRLKVEGVIYRF 440

Query: 188 KF 193
           KF
Sbjct: 441 KF 442


>U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine
           receptor, class m protein2 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -3

Query: 291 FNVLVPF-----PLTFSTCPNVNPIIVSAAHSNV 205
           FN+  PF     P  FS CP +NPI+V     NV
Sbjct: 270 FNIENPFLANNLPFLFSWCPAINPILVMVMVKNV 303


>AL590342-3|CAC35860.1|  421|Caenorhabditis elegans Hypothetical
           protein Y66A7A.6 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 337 NIYIFALLVLYAPSHKQWPAVEDTSDTQNLSEEIEFTPLQER 462
           +I++FA +V  A   ++ P  E     +NL   ++  PL ER
Sbjct: 8   SIFVFAGIVFAAEEAEKLPKCEHVDPYENLEGWLDLKPLTER 49


>AL110477-4|CAB54328.1|  309|Caenorhabditis elegans Hypothetical
           protein Y113G7B.6 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -3

Query: 249 PNVNPIIVSAAHSNVASIRNLKRYIMPS*CKRLTEHMVGKD 127
           P ++ + +   H  V ++  +KR ++   C++L + M  KD
Sbjct: 16  PTLSDMPIGVIHEIVDNLEGMKRLVLRKVCRKLRDFMDNKD 56


>AL032622-5|CAA21500.1|  421|Caenorhabditis elegans Y66A7A.6
           protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 337 NIYIFALLVLYAPSHKQWPAVEDTSDTQNLSEEIEFTPLQER 462
           +I++FA +V  A   ++ P  E     +NL   ++  PL ER
Sbjct: 8   SIFVFAGIVFAAEEAEKLPKCEHVDPYENLEGWLDLKPLTER 49


>AF031842-1|AAC13678.1|  421|Caenorhabditis elegans GLY8 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 337 NIYIFALLVLYAPSHKQWPAVEDTSDTQNLSEEIEFTPLQER 462
           +I++FA +V  A   ++ P  E     +NL   ++  PL ER
Sbjct: 8   SIFVFAGIVFAAEEAEKLPKCEHVDPYENLEGWLDLKPLTER 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,284
Number of Sequences: 27780
Number of extensions: 314646
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)