Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00362
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 190 FETIYNAFIMQTPHRAHGW*RL 125
           FE +YNA   QT ++   W RL
Sbjct: 112 FELLYNAKDFQTFYKTAAWARL 133


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 190 FETIYNAFIMQTPHRAHGW*RL 125
           FE +YNA   QT ++   W RL
Sbjct: 112 FELLYNAKDFQTFYKTAAWARL 133


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 229 YNRIYIGTSAEGQWKWDENIELEYTSAFFTGVYGMWN 339
           ++   I  SA+G    D+NI+ E+   + T    MW+
Sbjct: 258 HSHTIIYLSAKGHRPIDDNIDDEFKGTYKTLYKQMWS 294


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 304 SAFFTGVYGMWNIYIFALLVLYA 372
           SA +   YG+W  ++   L++Y+
Sbjct: 213 SASYLVCYGIWVYFVPLFLIIYS 235


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 304 SAFFTGVYGMWNIYIFALLVLYA 372
           SA +   YG+W  ++   L++Y+
Sbjct: 89  SASYLVCYGIWVYFVPLFLIIYS 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,117
Number of Sequences: 438
Number of extensions: 4222
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)