Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00362
(668 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04390.1 68417.m00627 Ulp1 protease family protein contains P... 29 3.7
At1g05680.1 68414.m00589 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.7
At5g53620.2 68418.m06662 expressed protein 28 6.5
At5g53620.1 68418.m06661 expressed protein 28 6.5
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 6.5
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l... 28 6.5
At1g23360.3 68414.m02922 UbiE/COQ5 methyltransferase family prot... 28 6.5
At1g23360.2 68414.m02921 UbiE/COQ5 methyltransferase family prot... 28 6.5
At1g23360.1 68414.m02923 UbiE/COQ5 methyltransferase family prot... 28 6.5
>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 963
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 289 ELEYTSAFFTGVYGMWNIYIFALLVLYA-PSHKQWPAVEDTSDTQNLSEEIEFTPLQ 456
E+E + V G+ +Y L+VL A P+ K+ P EDT +++ E +E P Q
Sbjct: 217 EVEQLATTSVDVQGL--LYALQLVVLQAAPAIKEGPVSEDTVCSESDEETLELIPRQ 271
>At1g05680.1 68414.m00589 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 453
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 406 YPQRLAIACDSEHTKPTMQICRCSTFHKLQ*KMLKY 299
YP L I D + I C+TF KL+ K+LK+
Sbjct: 184 YPNILRIVVDQLSNIDRVDIVLCNTFDKLEEKLLKW 219
>At5g53620.2 68418.m06662 expressed protein
Length = 682
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 370 APSHKQWPAVEDTSDTQNL--SEEIEFTPLQERS 465
APS K+W AV D+ DT + E+++ ER+
Sbjct: 23 APSRKEWRAVSDSQDTTDYVDLEQLKLNRTDERT 56
>At5g53620.1 68418.m06661 expressed protein
Length = 682
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 370 APSHKQWPAVEDTSDTQNL--SEEIEFTPLQERS 465
APS K+W AV D+ DT + E+++ ER+
Sbjct: 23 APSRKEWRAVSDSQDTTDYVDLEQLKLNRTDERT 56
>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavanone 3-hydroxylase
[Persea americana][GI:727410]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 341
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 294 GVYFSIFHWSLWNVEHLHICIVGFVCSESQAMAS 395
GVY S++H ++ N E+ + + F+C A+ S
Sbjct: 262 GVYKSVWHRAVTNTENPRLSVASFLCPADCAVMS 295
>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
similarity to Exostosin-like 2, Homo sapiens
[SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
Length = 765
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/94 (21%), Positives = 42/94 (44%)
Frame = +1
Query: 208 IAVCCTDYNRIYIGTSAEGQWKWDENIELEYTSAFFTGVYGMWNIYIFALLVLYAPSHKQ 387
+ + C IY G+ A + + ++ ++T A T +WN+ ++ PS K+
Sbjct: 489 LLLTCVGVRYIYGGSGAVEPYPFKGHLS-QFTLATMTYDARLWNLKMYVKRYSRCPSVKE 547
Query: 388 WPAVEDTSDTQNLSEEIEFTPLQERSSEISSLTS 489
+ + +LSE P++ R + +SL +
Sbjct: 548 IVVIWNKGPPPDLSELDSAVPVRIRVQKQNSLNN 581
>At1g23360.3 68414.m02922 UbiE/COQ5 methyltransferase family protein
similar to 2-hexaprenyl-1,4-naphthoquinone
methyltransferase GB:BAA25267 GI:2982680 from
[Micrococcus luteus]; contains Pfam profile PF01209:
methlytransferase, UbiE/COQ5 family
Length = 160
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 43 GWNIDWHLFPILVLHDLASFYQYI 114
GW ID + P+ ++DLA Y+Y+
Sbjct: 95 GWMIDNVVVPVATVYDLAKEYEYL 118
>At1g23360.2 68414.m02921 UbiE/COQ5 methyltransferase family protein
similar to 2-hexaprenyl-1,4-naphthoquinone
methyltransferase GB:BAA25267 GI:2982680 from
[Micrococcus luteus]; contains Pfam profile PF01209:
methlytransferase, UbiE/COQ5 family
Length = 160
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 43 GWNIDWHLFPILVLHDLASFYQYI 114
GW ID + P+ ++DLA Y+Y+
Sbjct: 95 GWMIDNVVVPVATVYDLAKEYEYL 118
>At1g23360.1 68414.m02923 UbiE/COQ5 methyltransferase family protein
similar to 2-hexaprenyl-1,4-naphthoquinone
methyltransferase GB:BAA25267 GI:2982680 from
[Micrococcus luteus]; contains Pfam profile PF01209:
methlytransferase, UbiE/COQ5 family
Length = 198
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 43 GWNIDWHLFPILVLHDLASFYQYI 114
GW ID + P+ ++DLA Y+Y+
Sbjct: 133 GWMIDNVVVPVATVYDLAKEYEYL 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,627,083
Number of Sequences: 28952
Number of extensions: 273757
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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