Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00361
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.49
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 31 0.86
03_04_0006 + 16257288-16259522 31 1.1
06_03_0854 + 25400855-25403741,25406174-25407708 30 2.0
06_03_1448 + 30235336-30236763 29 4.6
06_03_1443 + 30182018-30183445 29 4.6
06_03_1440 + 30166515-30167942 29 4.6
06_03_1437 + 30151030-30152457 29 4.6
06_03_1429 + 30100834-30102261 29 4.6
06_03_1425 + 30084383-30085810 29 4.6
06_03_1420 - 30053713-30055140 29 4.6
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.6
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543... 29 4.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.6
10_08_0350 + 17066058-17066235,17067084-17067223 28 6.0
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 6.0
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 6.0
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 6.0
12_02_0077 - 13288916-13289659,13289689-13289691 28 8.0
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 28 8.0
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 8.0
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 28 8.0
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 431 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 309
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 36 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSL 182
G+ PR + D EW N PT+ ++ + +PRE Q+ K + L
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFIL 1441
>03_04_0006 + 16257288-16259522
Length = 744
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -1
Query: 291 RVSNETMKVVVFRDD-RAKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAV 124
R + T+ V R+ A+RSP Y T L + ARL T PA SP +AV
Sbjct: 145 RAVDHTLVYVSTREPVAARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAV 204
Query: 123 VSLDSR*GQWE 91
S + G W+
Sbjct: 205 ASWQGKPGLWD 215
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 255 RDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 118
R AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 471 RGSGAKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 436 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 299
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 436 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 299
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 436 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 299
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 436 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 299
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 436 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 299
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 436 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 299
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 436 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 299
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 364 TTLHAWNETPCARRYY 317
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>02_05_0726 -
31252210-31253166,31253667-31253840,31254320-31254364,
31254463-31254573,31254669-31254746,31255170-31255234,
31255358-31255733,31256891-31257035,31257308-31257462,
31259036-31259182
Length = 750
Score = 28.7 bits (61), Expect = 4.6
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Frame = -1
Query: 435 PRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADI--IDRAPLP------PNRVSN 280
P LA+ + I ++F ++ TS G H + AP P P+ +++
Sbjct: 84 PLLALPNTAIIKDFVGFCHIATTSSSPKTGQGHEPTTCFRPVLLAPSPLCLTRGPHTITH 143
Query: 279 ETMKVVVFRDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 133
+ + + SP Y P ++ N + S +T S P PK P
Sbjct: 144 QIEAPQADHVEDSVSSPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDP 192
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 372 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 461
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>10_08_0350 + 17066058-17066235,17067084-17067223
Length = 105
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/74 (27%), Positives = 27/74 (36%)
Frame = +3
Query: 294 WAEAVRGR*YRRAHGVSFQACRVVTWRKRSSPFKTPA*SGSRTLPGGEFDWGGTSVKE*R 473
W R R + + +A R R+ +SP G GG+ W E R
Sbjct: 16 WDRTARRRIFPQMQPPKARASRASDQRRVASPLSKSENDGDAAAEGGDSRW-FVLAGEFR 74
Query: 474 RCPKASSARTETRV 515
R P+A R RV
Sbjct: 75 RAPQADGGRRWNRV 88
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/66 (37%), Positives = 30/66 (45%)
Frame = -1
Query: 306 PLPPNRVSNETMKVVVFRDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLA 127
P+ P RV R DR+K PL+ P AR SSTGSSFP S P
Sbjct: 22 PVVPPRVPTILNLTSHHRLDRSK-----FLPLIHPTPARF-ISSTGSSFPPYSEPPPSAP 75
Query: 126 VVSLDS 109
++ L S
Sbjct: 76 MLELGS 81
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 451 PPQSNSPPGSVLEPDHAGVLNGDE 380
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 330 PADIIDRAPLPPNRVSNETMKVVVFRDDRAKRSPTYATPLMS 205
P + ID P + + + V +DD+ ++P ATP+ S
Sbjct: 80 PTECIDLNKTPARKPKKKKHRPKVLKDDKPSKTPKSATPIPS 121
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 186 ESSSTGSSFPADSPKPVPLAVVSLDSR 106
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 295 GRKRCAVD-NIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNN 471
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA + ++
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGAA-AAASS 98
Query: 472 AGVLRP 489
A RP
Sbjct: 99 APAKRP 104
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 328 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 450
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 345 TKHRAPADIIDRAPLPPNRVSNETMKVVVFRDDRAKRSPTYATP 214
T H+ P + RA + P RVS+ + VF DD P P
Sbjct: 316 TSHKIPQKVGSRAAVQPTRVSS----IEVFVDDECAEEPVPQVP 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,558,594
Number of Sequences: 37544
Number of extensions: 476645
Number of successful extensions: 1550
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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