Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00361
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011765-1|AAH11765.1| 449|Homo sapiens chromosome 11 open read... 36 0.14
AY358754-1|AAQ89114.1| 449|Homo sapiens C11orf24 protein. 36 0.14
AF264781-1|AAG36936.1| 449|Homo sapiens DM4E3 protein. 36 0.14
BC126910-1|AAI26911.2| 1768|Homo sapiens TNS1 protein protein. 32 1.7
BC116188-1|AAI16189.1| 1713|Homo sapiens TNS1 protein protein. 32 1.7
AB209238-1|BAD92475.1| 873|Homo sapiens tensin variant protein. 32 1.7
X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for ... 31 3.8
M14058-1|AAA51851.1| 705|Homo sapiens C1R protein. 31 3.8
BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1,... 31 3.8
AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of compl... 31 3.8
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 30 6.7
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 6.7
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 6.7
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 6.7
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 6.7
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 6.7
>BC011765-1|AAH11765.1| 449|Homo sapiens chromosome 11 open reading
frame 24 protein.
Length = 449
Score = 35.9 bits (79), Expect = 0.14
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -1
Query: 459 QMYRPSQTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR--- 289
Q+ + S PR A + TR AT+ + +SP+ T + + +P+PP R
Sbjct: 194 QVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQA 253
Query: 288 ---VSNETM-KVVVFRDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 133
+S ++ + VV +++ P+ TP +P + ++ + P SP PVP
Sbjct: 254 QGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVP 309
>AY358754-1|AAQ89114.1| 449|Homo sapiens C11orf24 protein.
Length = 449
Score = 35.9 bits (79), Expect = 0.14
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -1
Query: 459 QMYRPSQTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR--- 289
Q+ + S PR A + TR AT+ + +SP+ T + + +P+PP R
Sbjct: 194 QVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQA 253
Query: 288 ---VSNETM-KVVVFRDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 133
+S ++ + VV +++ P+ TP +P + ++ + P SP PVP
Sbjct: 254 QGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVP 309
>AF264781-1|AAG36936.1| 449|Homo sapiens DM4E3 protein.
Length = 449
Score = 35.9 bits (79), Expect = 0.14
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -1
Query: 459 QMYRPSQTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNR--- 289
Q+ + S PR A + TR AT+ + +SP+ T + + +P+PP R
Sbjct: 194 QVPKSSALPRTATLATLATRAQTVATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQA 253
Query: 288 ---VSNETM-KVVVFRDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 133
+S ++ + VV +++ P+ TP +P + ++ + P SP PVP
Sbjct: 254 QGPISQVSVDQPVVNTTNKSTPMPSNTTPEPAPTPTVVTTTKAQAREPTASPVPVP 309
>BC126910-1|AAI26911.2| 1768|Homo sapiens TNS1 protein protein.
Length = 1768
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Frame = -1
Query: 372 ATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFRDDRAKRSP-TYATPLMSPYN 196
A +PL LG K PADI+ P + V P +++ P Y
Sbjct: 1030 AKTPLSALGLKPHNPADILLHPTGEPRSYVESVARTAVAGPRAQDSEPKSFSAPATQAYG 1089
Query: 195 AR--LESSSTGSSFPADSPKPVPLAVVSLDS 109
L + + G SF + SP ++S DS
Sbjct: 1090 HEIPLRNGTLGGSFVSPSPLSTSSPILSADS 1120
>BC116188-1|AAI16189.1| 1713|Homo sapiens TNS1 protein protein.
Length = 1713
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Frame = -1
Query: 372 ATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFRDDRAKRSP-TYATPLMSPYN 196
A +PL LG K PADI+ P + V P +++ P Y
Sbjct: 975 AKTPLSALGLKPHNPADILLHPTGEPRSYVESVARTAVAGPRAQDSEPKSFSAPATQAYG 1034
Query: 195 AR--LESSSTGSSFPADSPKPVPLAVVSLDS 109
L + + G SF + SP ++S DS
Sbjct: 1035 HEIPLRNGTLGGSFVSPSPLSTSSPILSADS 1065
>AB209238-1|BAD92475.1| 873|Homo sapiens tensin variant protein.
Length = 873
Score = 32.3 bits (70), Expect = 1.7
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Frame = -1
Query: 372 ATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFRDDRAKRSP-TYATPLMSPYN 196
A +PL LG K PADI+ P + V P +++ P Y
Sbjct: 135 AKTPLSALGLKPHNPADILLHPTGEPRSYVESVARTAVAGPRAQDSEPKSFSAPATQAYG 194
Query: 195 AR--LESSSTGSSFPADSPKPVPLAVVSLDS 109
L + + G SF + SP ++S DS
Sbjct: 195 HEIPLRNGTLGGSFVSPSPLSTSSPILSADS 225
>X04701-1|CAA28407.1| 705|Homo sapiens protein ( Human mRNA for
complement component C1r. ).
Length = 705
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 80 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 190
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>M14058-1|AAA51851.1| 705|Homo sapiens C1R protein.
Length = 705
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 80 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 190
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>BC035220-1|AAH35220.1| 705|Homo sapiens complement component 1, r
subcomponent protein.
Length = 705
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 80 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 190
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AB083037-1|BAC19850.2| 705|Homo sapiens r subcomponent of
complement component 1 protein.
Length = 705
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 80 D*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSS 190
D + HCPY + A G +GE GK+ P +LD+S
Sbjct: 244 DHQQVHCPYD-QLQIYANGKNIGEFCGKQRPPDLDTS 279
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 30.3 bits (65), Expect = 6.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 613 YTIIYY*RIDRPCFRSP--YAY*TSGSSQ------LLPFCSTRVSVLAELALGHLRYSLT 458
Y ++Y R D P F SP +A+ G+S L PF + R+ V+A G + T
Sbjct: 3998 YRVVYQERPDDPTFNSPTVHAFTVKGTSHQAHLYGLEPFTTYRIGVVAANHAGEILSPWT 4057
Query: 457 DVPPQSNSPPG 425
+ +SP G
Sbjct: 4058 LIQTLESSPSG 4068
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 6.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 613 YTIIYY*RIDRPCFRSP--YAY*TSGSSQ------LLPFCSTRVSVLAELALGHLRYSLT 458
Y ++Y R D P F SP +A+ G+S L PF + R+ V+A G + T
Sbjct: 3998 YRVVYQERPDDPTFNSPTVHAFTVKGTSHQAHLYGLEPFTTYRIGVVAANHAGEILSPWT 4057
Query: 457 DVPPQSNSPPG 425
+ +SP G
Sbjct: 4058 LIQTLESSPSG 4068
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 6.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 613 YTIIYY*RIDRPCFRSP--YAY*TSGSSQ------LLPFCSTRVSVLAELALGHLRYSLT 458
Y ++Y R D P F SP +A+ G+S L PF + R+ V+A G + T
Sbjct: 3998 YRVVYQERPDDPTFNSPTVHAFTVKGTSHQAHLYGLEPFTTYRIGVVAANHAGEILSPWT 4057
Query: 457 DVPPQSNSPPG 425
+ +SP G
Sbjct: 4058 LIQTLESSPSG 4068
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 6.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 613 YTIIYY*RIDRPCFRSP--YAY*TSGSSQ------LLPFCSTRVSVLAELALGHLRYSLT 458
Y ++Y R D P F SP +A+ G+S L PF + R+ V+A G + T
Sbjct: 3998 YRVVYQERPDDPTFNSPTVHAFTVKGTSHQAHLYGLEPFTTYRIGVVAANHAGEILSPWT 4057
Query: 457 DVPPQSNSPPG 425
+ +SP G
Sbjct: 4058 LIQTLESSPSG 4068
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 6.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 613 YTIIYY*RIDRPCFRSP--YAY*TSGSSQ------LLPFCSTRVSVLAELALGHLRYSLT 458
Y ++Y R D P F SP +A+ G+S L PF + R+ V+A G + T
Sbjct: 3998 YRVVYQERPDDPTFNSPTVHAFTVKGTSHQAHLYGLEPFTTYRIGVVAANHAGEILSPWT 4057
Query: 457 DVPPQSNSPPG 425
+ +SP G
Sbjct: 4058 LIQTLESSPSG 4068
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 30.3 bits (65), Expect = 6.7
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -3
Query: 613 YTIIYY*RIDRPCFRSP--YAY*TSGSSQ------LLPFCSTRVSVLAELALGHLRYSLT 458
Y ++Y R D P F SP +A+ G+S L PF + R+ V+A G + T
Sbjct: 3998 YRVVYQERPDDPTFNSPTVHAFTVKGTSHQAHLYGLEPFTTYRIGVVAANHAGEILSPWT 4057
Query: 457 DVPPQSNSPPG 425
+ +SP G
Sbjct: 4058 LIQTLESSPSG 4068
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,705,829
Number of Sequences: 237096
Number of extensions: 2466940
Number of successful extensions: 5453
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5449
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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