Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00360
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...   174   3e-46
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...   170   5e-45
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...   142   2e-36
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    26   0.22 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.7  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   4.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   4.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   4.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   4.8  

>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score =  174 bits (424), Expect = 3e-46
 Identities = 71/81 (87%), Positives = 77/81 (95%)
 Frame = +2

Query: 8   RKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 187
           RKVLP  KTDEPICP+GKL+CG+G+CI+KELFCNGKPDCKDESDEN+CTVE DPNRAPDC
Sbjct: 103 RKVLPNFKTDEPICPDGKLSCGNGECIDKELFCNGKPDCKDESDENSCTVETDPNRAPDC 162

Query: 188 DPNQCVLPDCFCSADGTRIPG 250
           DP QCVLPDCFCSADGTRIPG
Sbjct: 163 DPTQCVLPDCFCSADGTRIPG 183



 Score =  164 bits (398), Expect = 5e-43
 Identities = 67/84 (79%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 EPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQEL 435
           EP  VPQM+T+TFNGAVN+DNIDLYE+IFNGNR NPNGCQI+GTFFVSHKYTNY+AVQ+L
Sbjct: 186 EPANVPQMITLTFNGAVNIDNIDLYEEIFNGNRANPNGCQIRGTFFVSHKYTNYSAVQDL 245

Query: 436 HRQGHEISVFSITHKDDPQYWTSG 507
           HR+GHEI+VFS+THK+DP YW+ G
Sbjct: 246 HRRGHEIAVFSLTHKEDPNYWSQG 269


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score =  170 bits (414), Expect = 5e-45
 Identities = 70/81 (86%), Positives = 76/81 (93%)
 Frame = +2

Query: 8   RKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 187
           RKVLP  KTDEPICP+GKL+CG+G+CI+KELFCNGKPDCKDESDEN+CTVE DPNRA DC
Sbjct: 96  RKVLPNFKTDEPICPDGKLSCGNGECIDKELFCNGKPDCKDESDENSCTVETDPNRALDC 155

Query: 188 DPNQCVLPDCFCSADGTRIPG 250
           DP QCVLPDCFCSADGTRIPG
Sbjct: 156 DPTQCVLPDCFCSADGTRIPG 176



 Score =  164 bits (399), Expect = 3e-43
 Identities = 68/84 (80%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 EPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQEL 435
           EP  VPQM+T+TFNGAVNVDNIDLYE+IFNGNR NPNGCQI+GTFFVSHKYTNY+AVQ+L
Sbjct: 179 EPANVPQMITLTFNGAVNVDNIDLYEEIFNGNRANPNGCQIRGTFFVSHKYTNYSAVQDL 238

Query: 436 HRQGHEISVFSITHKDDPQYWTSG 507
           HR+GHEI+VFS+THK+DP YW+ G
Sbjct: 239 HRRGHEIAVFSLTHKEDPNYWSQG 262


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score =  142 bits (343), Expect = 2e-36
 Identities = 57/83 (68%), Positives = 66/83 (79%)
 Frame = +2

Query: 8   RKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 187
           RKV P+L TDEP+CP+G LACG G+CIE+ LFCNG+ DC D SDEN C ++ DPNRAP C
Sbjct: 104 RKVKPLLITDEPLCPDGSLACGDGNCIERGLFCNGEKDCSDGSDENTCDIDNDPNRAPPC 163

Query: 188 DPNQCVLPDCFCSADGTRIPGGM 256
           DP  CVLPDCFCS DGT IPG +
Sbjct: 164 DPAVCVLPDCFCSEDGTTIPGDL 186



 Score =  134 bits (324), Expect = 4e-34
 Identities = 55/79 (69%), Positives = 70/79 (88%)
 Frame = +1

Query: 268 VPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRQG 447
           VPQM+TITF+ A+N +NI+LY++IFNG R NPNGC IK TFFVSHKYTNY+AVQE+HR+G
Sbjct: 191 VPQMITITFDDAINNNNIELYKEIFNGKRKNPNGCDIKATFFVSHKYTNYSAVQEMHRKG 250

Query: 448 HEISVFSITHKDDPQYWTS 504
           HEI+V SITH DD ++W++
Sbjct: 251 HEIAVHSITHNDDERFWSN 269


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 120 SGLPLQNNSFSMQSPLPQANLP 55
           +G+PLQN   ++  P+ Q  LP
Sbjct: 187 AGIPLQNPGLNLNPPVTQTQLP 208


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 107 NGKPDCKDESDENAC 151
           NGKP C  E D+  C
Sbjct: 880 NGKPTCWRECDKATC 894


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/51 (23%), Positives = 18/51 (35%)
 Frame = +2

Query: 107 NGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGMN 259
           N +P     S+      ++ PN  P+CD    V        D    P G +
Sbjct: 117 NTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSGQH 167


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/51 (23%), Positives = 18/51 (35%)
 Frame = +2

Query: 107 NGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGMN 259
           N +P     S+      ++ PN  P+CD    V        D    P G +
Sbjct: 117 NTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSGQH 167


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 80  DCIEKELFCNGKPDCKDESDENACTVELD 166
           D I+ + FCNG     D      CT ++D
Sbjct: 545 DDIDPQQFCNGDNRPADCQQNCMCTHKVD 573


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 12/51 (23%), Positives = 18/51 (35%)
 Frame = +2

Query: 107 NGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGMN 259
           N +P     S+      ++ PN  P+CD    V        D    P G +
Sbjct: 117 NTQPPVTSSSNILQNLADITPNVTPNCDVKSSVCSPGSGHQDSRTSPSGQH 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,112
Number of Sequences: 336
Number of extensions: 2914
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)