Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00360
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    35   0.008
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   0.70 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   0.92 
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    28   0.92 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.6  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   3.7  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   3.7  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   4.9  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   4.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   8.6  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   8.6  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.6  

>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = -2

Query: 291 CNSNHLRYLIWFIPPGIRV---PSAEQKQ 214
           C+ N L YL+ +IPPGIRV   PS+++ Q
Sbjct: 105 CDDNRLNYLVKYIPPGIRVSLHPSSQKSQ 133


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -2

Query: 234 PSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLP 55
           PS+    S  +    S S +   SSS+  + SS SS  S     ++S S  S +P  +  
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214

Query: 54  SGQIGSS 34
           S    SS
Sbjct: 215 SSSHSSS 221


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 78  PLPQANLPSGQIGSSVFKIG 19
           P+P+A LPS  IG  VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -2

Query: 237 VPSAEQKQSGR---THWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQ 67
           +PS E+  S R   T      + +  G +  +   S D++LQS  PL+      +S +  
Sbjct: 498 LPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLKKAKEPEESSITP 557

Query: 66  ANLPSGQIGSSV 31
              PS  +G S+
Sbjct: 558 TTPPSFNVGESL 569


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 22/78 (28%), Positives = 32/78 (41%)
 Frame = -2

Query: 261 WFIPPGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQ 82
           +FI      PS+    S  +    S   +    SS+  + SS SS  S    +++S S  
Sbjct: 145 YFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSS 204

Query: 81  SPLPQANLPSGQIGSSVF 28
           S    A+ PS    SS F
Sbjct: 205 SSKSSAS-PSSSKSSSKF 221


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 108 LQNNSFSMQSPLPQANLPS-GQIGSSVFK 25
           L+ NSF +  P+P  ++PS   I S VFK
Sbjct: 305 LKKNSFCLYLPIPLTSIPSTPSIRSHVFK 333


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 125 KDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 232
           K +SD     VELD     + DP+  VLP+   ++D
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSD 330


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   RHEKSFTNLENGRTYLS*R*IGLWQRRL 84
           +H K F  L+NG+T L    +GL  R L
Sbjct: 478 KHSKQFEELKNGKTSLIKWFVGLTMREL 505


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 174 LFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGS 37
           +FG + +V   +S SS  SG  L++   S ++   Q+ LP+  + S
Sbjct: 397 IFGMNQSVIGANSGSSNSSGSSLKSAPVSPRTAAAQSLLPNSVVSS 442


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 117  QTAKMNPMKMLALSNWTQIERLTVI 191
            Q  K+ P    +LSNWT+ E L ++
Sbjct: 1647 QWVKLQPTNFDSLSNWTKEETLKLL 1671


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 141 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQI 43
           +S   LQ   P+Q+++F+  +P P   +P   I
Sbjct: 271 ASADRLQKNHPVQSSNFNPYTPAPSITVPPNYI 303


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 78  PLPQANLPSGQIGSSVFKIG 19
           P+P+A LP   IGS +F  G
Sbjct: 402 PVPEARLPPMMIGSVLFPAG 421


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 162 SSTVQAFSSDSSLQSGLPLQNNSF 91
           SS  ++ SSD++   G PLQN  F
Sbjct: 652 SSDFESKSSDNTSLDGTPLQNTDF 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,899
Number of Sequences: 5004
Number of extensions: 44043
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)