Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00360
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 31 0.70
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 30 0.93
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 29 1.6
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 29 2.8
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 6.5
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 27 6.5
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523... 27 6.5
05_06_0137 + 25936516-25936606,25936716-25937268,25937436-259379... 27 6.5
10_08_0994 + 22107987-22108874 27 8.7
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 27 8.7
02_05_0316 - 27825871-27826509 27 8.7
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 30.7 bits (66), Expect = 0.70
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -2
Query: 201 HWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKI 22
H + G + ST SS S +S L + +S + LP+ +LP G + S V I
Sbjct: 1045 HQAITNHGEMHQEPSTCPQCSSGSLRKSLLSREGHSMDTEIILPEIDLPVGMVDSFVHDI 1104
Query: 21 GKTFLV 4
G LV
Sbjct: 1105 GGLDLV 1110
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 89 EKELFCNGKPDCKDESDENACTVELDPNRAP 181
+++L C+G D KD S+ AC +D N P
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVP 1032
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -2
Query: 318 VVNIHSTVKCNSNHLRYL--IWFIPPGIRVPSAEQKQSGRTHWLGSQSGA 175
+ I S + C+ N + +L + IPP +++ S+ Q G+ + + + SGA
Sbjct: 49 IPEIQSELTCHLNKVSWLPDFYAIPPQVQIASSMAYQQGKIYGIDAASGA 98
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 134 SDENACTVELDPNRAPDCDPNQCVLP 211
S EN +++DP+ C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = -2
Query: 189 SQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSS 34
SQS ++ S S FSS SS +S L Q+ S + S P + P Q GS+
Sbjct: 744 SQSSSITTSGSVPFQFSSQSSSESSLAGQDKSKAASSSAPFSFSP--QFGST 793
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 27.5 bits (58), Expect = 6.5
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 234 PSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLP 55
PSA S T G S FGS+ST AF S+ G P ++ F +P A+ P
Sbjct: 90 PSAPAFGSMSTGAFGQPSAPAFGSTST-GAFGQPSTQAFGTP-SSSPFGSSTPAFGAS-P 146
Query: 54 SGQIG--SSVFKIGKT 13
+ G SS F G+T
Sbjct: 147 APVFGATSSTFGSGQT 162
>09_04_0426 -
17451731-17451886,17451974-17452079,17452289-17452387,
17452782-17452888,17452985-17453230,17454187-17454461,
17454834-17454886,17455163-17455455
Length = 444
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 86 IEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIP 247
I E+ N +C+ SD AC+ +D + + DP P C + DG P
Sbjct: 232 ISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFP 286
>05_06_0137 +
25936516-25936606,25936716-25937268,25937436-25937932,
25938030-25938090,25938411-25938482,25938563-25938634,
25938730-25938810,25938918-25939081,25939174-25939442,
25939531-25939657,25939778-25939846,25939944-25940136,
25940232-25940733
Length = 916
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2
Query: 225 EQKQSGRTHWLGS---QSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLP 55
++K + +W+G SG L G S+ AF++ +LQ+ L L NN+ + P + LP
Sbjct: 388 KEKYQVKKNWMGDPNLSSGGLSGEISS--AFANLKALQN-LDLSNNNLTGSIPDALSQLP 444
Query: 54 S 52
S
Sbjct: 445 S 445
>10_08_0994 + 22107987-22108874
Length = 295
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 75 AEIALKKNCSVMVNQTAKMNPMKMLALSNWTQIERLT 185
A++AL K VMV + A++ P++ + W Q+ L+
Sbjct: 188 AKMALAK-FMVMVTEAARLKPVRRAVVERWEQVSYLS 223
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 346 GNRHNPNGCQIKGTFFVS 399
GN H P+G ++KG F+S
Sbjct: 160 GNSHTPSGWELKGAIFLS 177
>02_05_0316 - 27825871-27826509
Length = 212
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 11 KVLPILKTDEPICPEGKLACGSGDC 85
+ LP+++ DE + CG GDC
Sbjct: 92 EALPVVRFDELVASAPAAVCGGGDC 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,402
Number of Sequences: 37544
Number of extensions: 274203
Number of successful extensions: 759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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