Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00360
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 91 4e-19
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 2e-17
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 2e-16
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 48 4e-06
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 48 6e-06
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 47 8e-06
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 47 8e-06
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 46 1e-05
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 46 2e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 44 7e-05
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 44 7e-05
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 43 1e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 42 2e-04
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 42 2e-04
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 42 2e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 42 3e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 42 3e-04
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 41 7e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 41 7e-04
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 9e-04
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 40 9e-04
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 9e-04
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 38 0.004
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 37 0.011
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.015
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 36 0.019
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 36 0.019
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 35 0.034
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.034
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 35 0.044
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.059
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 34 0.059
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.059
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 34 0.077
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 34 0.077
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 29 1.7
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 2.2
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4) 28 3.8
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 6.7
SB_47693| Best HMM Match : TSP_1 (HMM E-Value=2.3e-09) 27 8.9
SB_43730| Best HMM Match : Drf_FH1 (HMM E-Value=0.74) 27 8.9
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 91.5 bits (217), Expect = 4e-19
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = +1
Query: 223 FC*RYTYPRWNEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSH 402
FC P P ++PQM+ +TF+ A+N +Y++IFNG + NPNGC I+ TFFVSH
Sbjct: 580 FCSGALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGKK-NPNGCDIRATFFVSH 638
Query: 403 KYTNYAAVQELHRQGHEISVFSITHKDDPQYW 498
+YT Y +Q L+ + HEI+ SI+H+ +W
Sbjct: 639 EYTQYQLLQALYHERHEIADHSISHRLPIPWW 670
Score = 37.5 bits (83), Expect = 0.006
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 176 APDCDPNQCVLPDCFCSADGTRIPGGMN 259
A C P+ C LP+CFCS G +PGG+N
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLN 591
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 85.4 bits (202), Expect = 2e-17
Identities = 33/85 (38%), Positives = 56/85 (65%)
Frame = +1
Query: 244 PRWNEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAA 423
P +P Q+PQM+ +TF+ A+N+ Y+ + N + NPNGC ++ TFFVSH+YT+Y
Sbjct: 1557 PNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDTK-NPNGCNVRATFFVSHEYTDYQL 1615
Query: 424 VQELHRQGHEISVFSITHKDDPQYW 498
+ L+ + HEI+ +I+H+ ++W
Sbjct: 1616 LGTLYHERHEIADHTISHRTPIEWW 1640
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 82.2 bits (194), Expect = 2e-16
Identities = 34/80 (42%), Positives = 49/80 (61%)
Frame = +1
Query: 259 PNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELH 438
P PQ++ ITF+ + V N + Y+ G NPNGC I TFF+SH YTNY ++LH
Sbjct: 54 PALTPQIIMITFDDDITVINYEQYKDAVKGFT-NPNGCPITATFFISHNYTNYYLAEKLH 112
Query: 439 RQGHEISVFSITHKDDPQYW 498
+GHE++ ++TH+ YW
Sbjct: 113 SEGHELADHTVTHRTPTTYW 132
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 170 NRAPDCDPNQCVLPDCFCSADGTRIPGGMN 259
N A CD +C P+C CS D + PGG++
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLS 53
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +2
Query: 29 KTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVL 208
KT C G+ CG+G CI C+ DC D SDEN C CD +C+
Sbjct: 182 KTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNGRCIS 241
Query: 209 PDCFCSAD 232
C D
Sbjct: 242 SKWRCDHD 249
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C +G CI + C+ DC D SDE C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C K AC SG+CI+ C+G DCKD SDE+ C + + C CV C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCD 1213
Query: 227 A-----DGTRIPG 250
DGT PG
Sbjct: 1214 GKKDCEDGTDEPG 1226
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 5 TRKVLPILKTDEPICPEG--KLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRA 178
T + LP+ CP+ + C +G C+ ++L C+G C D SDE C L A
Sbjct: 1103 TCEQLPVHSVPGFRCPDKSTQFQCVNGQCVSRDLICDGDNACLDFSDEANCKC-LSSKFA 1161
Query: 179 PDCDPNQCVLPDCFCSADGT 238
C+ +C+ D DGT
Sbjct: 1162 --CESGECI--DVVGLCDGT 1177
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 47.6 bits (108), Expect = 6e-06
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
CP K C G CI++ CNGK DC D SDE C
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGC 38
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C + C +G CI +E C+ + DC D SDE C PN C C+ C
Sbjct: 2457 CDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCD 2516
Query: 227 AD 232
D
Sbjct: 2517 GD 2518
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNQCV 205
CP K C +G CI K C+G+ DC D SDE + C+ + DP C +C+
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCI 101
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C G +C +G CI + C+ + DC D SDE C P C +CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLCD 2268
Query: 227 AD 232
+
Sbjct: 2269 GE 2270
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 205
C +G+ +C G CI + C+G DC D SDE P R C + CV
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCV 3259
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENA--CTVELDPNRAPDCDPNQCVLPDCF 220
C + C SG CI ++ C+G DC D SDE A C V +A +C+ +
Sbjct: 3046 CTADQFRCPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWR 3105
Query: 221 CSAD 232
C +
Sbjct: 3106 CDGE 3109
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENA 148
C + AC SG C+ K C+G DC D SDE++
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 38 EPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPD 214
E CP + C +G C+ + C+G+ DC D SDE C P + N C+
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSS 2304
Query: 215 CFC 223
C
Sbjct: 2305 WLC 2307
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 47 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENA--CT 154
CP G+ C +G CI E C+G+ DC+D SDEN+ CT
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 44 IC-PEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
IC P+ + C +G CI K+ C+G DC D SDE+ C
Sbjct: 86 ICDPKLEFQCANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 41 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 145
P C GK C +G CI C+G+ DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 47 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLPDCF 220
C + AC +G CI+++ C+G+ DC D SDE C +E N C + ++C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 221 C 223
C
Sbjct: 1147 C 1147
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
CP C SG CI C+G DC D SDE C
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDC 2530
Score = 40.3 bits (90), Expect = 9e-04
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C C + C+ + C+G DC+D SDE C V C +C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCD 3066
Query: 227 AD 232
D
Sbjct: 3067 GD 3068
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 142
C + AC +G CI L C+G DC D SDE
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 205
C + + C SG CI C+ DC D SDE C + CD C+
Sbjct: 3168 CAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE--NACTVELDPNRAPDCDPNQCV 205
CP+ C + C+++ C+ DC D SDE C + N CD N+C+
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP---DCDPNQCVLPDC 217
C + C SG+C+ C+G DC D+SDE + CD +C+
Sbjct: 2328 CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCISTRL 2387
Query: 218 FCSAD 232
C D
Sbjct: 2388 LCDGD 2392
Score = 36.3 bits (80), Expect = 0.015
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C C +G C ++ C+G DC D SDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +2
Query: 26 LKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQ 199
L+ C G++ CGS + CI C+G DC D DE E N + C +
Sbjct: 2280 LRCPPTTCVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDERQDCRERPCNVSEFRCTSGE 2339
Query: 200 CVLPDCFCSAD 232
CV C D
Sbjct: 2340 CVPASWRCDGD 2350
Score = 34.7 bits (76), Expect = 0.044
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 83 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 223
CI + C+G+ DC D SDE C + C +C+ C
Sbjct: 3141 CIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCISASWVC 3187
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNQCV 205
C C + CI + C+G+ DC D SDE ++C V + P D +C+
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 31.1 bits (67), Expect = 0.55
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +2
Query: 32 TDEPICPEGKLA-----C-GSGDCIEKELFCNGKPDCKDESDENACTVELD 166
+DE C EG C G+ CI C+G DC D DE + ++LD
Sbjct: 117 SDESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 44 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDE 142
IC C + CI K C+G C D+SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
Score = 30.7 bits (66), Expect = 0.72
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACT 154
C + C S CI C+ DC D SDE CT
Sbjct: 1047 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 1083
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 47 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 142
C + C + CI K C+G+ DC D SDE
Sbjct: 1127 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 1159
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 47 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDEN 145
C + + +C S C+ C+G+ DC D SDE+
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDES 2447
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + + C + C+ C+ DC D SDE C
Sbjct: 3330 CRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = +2
Query: 44 ICPEGKLACGSG-DCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPDC 217
+C G C CI C+G P C DE+ C +V CD +CV
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNCGSVNQCAPYHFRCDNFRCVYRSR 3024
Query: 218 FC 223
C
Sbjct: 3025 VC 3026
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 41 PICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV-ELDPNRAPDCDPNQCVLPD 214
P C G+ CG G+C+ + L CNG+ DC+D SDE C + + AP + VL D
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +2
Query: 44 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 151
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 47 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 223
C C S G CI K C+G+ DC D SDE C ++ +C+ NQCV C
Sbjct: 90 CGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCVPLSWKC 148
Query: 224 SADGTRIPGGMNQ 262
+ PGG ++
Sbjct: 149 DGEKDCRPGGFDE 161
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 223
C G+ C +G CI K L+C+G C D SDE C P+ C +C++ C
Sbjct: 91 CGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCEC---PSNMFLCPSGECIMGTQLC 146
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
CP C SG+CI C+GK DC D +DE C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 44.8 bits (101), Expect = 4e-05
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 175
C + C +G CI+ C+G DC+D SDE C + L P R
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDPNQCVLPDCF 220
CP C + C+ C+G+ DC D SDE+ C T N CD +C+
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEF-RCDDGRCITSTFR 401
Query: 221 CSAD 232
C +
Sbjct: 402 CDRE 405
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 26 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQC 202
L T + P C +G C+ KE C+G DC D SDE+ C P R P C P+
Sbjct: 294 LSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSSDEDNC-----PTRPPYTCPPSDF 348
Query: 203 VLPDCFCSADGTRIPG 250
+ C + R G
Sbjct: 349 TCANSQCVPNSFRCDG 364
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 32 TDEPI-CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 205
T P+ C + + C G+ C+ + C+G+ DC D SDE C + C +C+
Sbjct: 464 TPPPVKCRKNERMCADGNGCVHRRWICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCI 523
Query: 206 -LPDCFCSADGT 238
LP DGT
Sbjct: 524 PLPQ---KCDGT 532
Score = 34.7 bits (76), Expect = 0.044
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C G CI C+ + DC D SDE C
Sbjct: 383 CSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +2
Query: 47 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQCVLPD 214
C + C SG CI C+ + DC D SDE C P P C N+ + D
Sbjct: 422 CAPYEFTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPPVKCRKNERMCAD 479
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +2
Query: 44 ICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 151
+CP CGS CI C+ P C DE C
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNC 607
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPD 184
C + C + CI C+G +C D SDE C P + PD
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVPPQ-PD 554
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C E ++ CG+G C+ K C+ DC D +DE C C +C+L C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCD 726
Query: 227 AD 232
D
Sbjct: 727 GD 728
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C +G+CI K C+G+ DC ++SDEN C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 50 PEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLPDCFCS 226
P+ + C +G CI + C+ DC D SDE N+C C CV+ C
Sbjct: 628 PDTQFRCTNGRCIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCD 687
Query: 227 AD 232
D
Sbjct: 688 QD 689
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 44 ICPEGKLACGSG-DCIEKELFCNGKPDCKDESDE--NACTVELDPNRAP 181
IC +G+ CGS CI + C+G DC + +DE N E N P
Sbjct: 788 ICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGP 836
Score = 33.9 bits (74), Expect = 0.077
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN--QCVLPDC 217
C + C CI C+G DC D SDE C PN + C + QC +C
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 83 CIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPDCFCSAD 232
CI C+G+ DC D SDE C +P+ C +C+ C D
Sbjct: 599 CIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIPRRWVCDKD 649
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C + C +G C+ +E+ C+G C D SDE C + PD +CV P FC+
Sbjct: 38 CHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 227 AD 232
+
Sbjct: 95 GE 96
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 65 ACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 205
AC G C+ L CNG DC+D SDE + D R P P C+
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPPW-PRPCI 162
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C + C +G C+ +EL C+G C D SDE C + PD +CV P FC+
Sbjct: 38 CHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 227 AD 232
+
Sbjct: 95 GE 96
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 65 ACGSGDCIEKELFCNGKPDCKDESDE 142
AC G C+ L CNG DC+D SDE
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDE 142
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 20 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPD-CKDESDENACTVELDPNRAPDCDPN 196
P++ C + C +G+C+ K CNG D C D SDE+ CT L + C
Sbjct: 650 PVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGCTCGLHEFQ---CSSG 706
Query: 197 QCVLPDCFC 223
+C+ FC
Sbjct: 707 ECIEVATFC 715
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 32 TDEPICPEG--KLACGSGDCIEKELFCNGKPDCKDESDENAC 151
+DE C G + C SG+CIE FC+GK DC D DE C
Sbjct: 689 SDESGCTCGLHEFQCSSGECIEVATFCDGKKDCGDGFDETHC 730
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C E + C +G C+++ L C+G C D SDE C+ P+ C +C+ C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
CP C SG+CI CN + DC D +DE C
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNADERNC 253
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 175
C C SG+CI +L C+ DC D SDE C V+ DP R
Sbjct: 704 CTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGVQ-DPGR 745
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 154
C G+ C S +CI L C+G DC D SDE CT
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDEINCT 58
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 32 TDEPICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENAC 151
T +C + C GDCI C+G DC+ +DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 41 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
P+C G+ C G CI+ C+ DC D SDEN C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 20 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
P T P C G+ C +G CI C+ K DC D SDE C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 41 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
P CP G C G CI + L C+ + DC D DE +C
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 37.5 bits (83), Expect = 0.006
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 56 GKLACGSGDCIEKELFCNGKPDCKDESDENACTV 157
G + C +G CI+K C+ DC D SDE C +
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRCAL 3240
Score = 36.3 bits (80), Expect = 0.015
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 44 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 154
+C + C G C + C+ DC D SDE +C+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCS 3655
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDC--KDESDENAC 151
C + C G CI K C+ + DC D SDE+ C
Sbjct: 4059 CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESKC 4095
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 154
C + C SG CI C+ + DC D S+E T
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERNST 2818
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 47 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENAC 151
C + C + G CI C+ DC D SDE +C
Sbjct: 3425 CNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 62 LACGSGDCIEKELFCNGKPDCKDESDENAC 151
+A G CI C+ +CKD SDE C
Sbjct: 3855 VAEGPNACILSTQVCDFSKNCKDGSDEKNC 3884
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 41.9 bits (94), Expect = 3e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 59 KLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 169
+L C +G C +K +C+G+ DC D SDE C+ +P
Sbjct: 228 QLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANP 264
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 32 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 187
+DE CP ++ C S C+ + L C+GKPDC D SDE C V NR C
Sbjct: 1333 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 47 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLP 211
C + + C S CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 1351
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +2
Query: 47 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVE---LDPNRAPDCDPNQCVLPD 214
C + C D CI C+G+ DC D DE C + P+ P P C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGCATTAPVITPSLGPP-HPGDCNFEK 396
Query: 215 CFC 223
C
Sbjct: 397 DMC 399
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 47 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDEN 145
C ++ C SG C++++ C+ DC D +DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 41.1 bits (92), Expect = 5e-04
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 142
C E + C SGDC+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLPDCFC 223
CP + C +G CI C+G DC D SDE +C+ + C +C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 224 SAD 232
D
Sbjct: 70 DRD 72
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 154
C G+ +C +G CI + C+ DC D SDE C+
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNCS 85
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 169
C + +C +G C+ L C+G DC D SDE +C P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 34.7 bits (76), Expect = 0.044
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 181
C + C + C+ C+G+ DC D SDE C+ P P
Sbjct: 149 CHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +2
Query: 47 CPEGKLAC---GSGDCIEKELFCNGKPDCKDESDE 142
CP + C SG CI CNG+ DC D DE
Sbjct: 192 CPADWVRCFYNSSGLCISTSWLCNGRVDCPDAWDE 226
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 104 CNGKPDCKDESDENACTVEL 163
C+G DCKD +DE C++ L
Sbjct: 285 CDGSYDCKDYTDEFNCSMPL 304
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 47 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLPDCF 220
C + AC +G CI+++ C+G+ DC D SDE C +E N C + ++C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 221 C 223
C
Sbjct: 174 C 174
Score = 30.7 bits (66), Expect = 0.72
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACT 154
C + C S CI C+ DC D SDE CT
Sbjct: 74 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 110
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 47 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 142
C + C + CI K C+G+ DC D SDE
Sbjct: 154 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 186
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C G C +G CI L C+ DC DESDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 40.3 bits (90), Expect = 9e-04
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 44 ICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDP 193
+C + + CG S CI K C+GK DC DE C P P P
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKP 92
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN-QCVLPDCFC 223
C + C +G CI + C+ + DC D SDE C+ ++ + C + +C+ C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKIC 63
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 38 EPICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 151
+P C + C +G C+++ C+G DC D SDE C
Sbjct: 91 KPKCRISQRRCDNGSGCVDRMKICDGMRDCADGSDERGC 129
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 40.3 bits (90), Expect = 9e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 83 CIEKELFCNGKPDCKDESDENACTVELDPNR 175
CI+ C+GKP+C D SDEN C ++P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 36.7 bits (81), Expect = 0.011
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 35 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 145
D P C SG CI + C+GK DC D SDE+
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDES 391
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 35 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 205
D P C E + C +G CI+ + C+ +C D SDE C +PN C+ +C+
Sbjct: 1342 DCPPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGCAT-CEPNFF-RCNTGKCI 1396
Score = 35.9 bits (79), Expect = 0.019
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 47 CPEGKLACGS--GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCF 220
C ++C S CI K C+G DC D+SDE C N+ CD QC+ D
Sbjct: 1307 CKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCP-PCKENQF-RCDNGQCIDGDPR 1364
Query: 221 C 223
C
Sbjct: 1365 C 1365
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C C +G CI C+ DC D SDE C
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGC 1417
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 38.3 bits (85), Expect = 0.004
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C + C++++ CN K DC D SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 26 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVE 160
L + E C K C + CI+ CN + DC+D SDE +C E
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISCPPE 429
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 47 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLP 211
C + + C S CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 54
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +2
Query: 32 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVE 160
+DE CP ++ C S C+ + L C+GKPDC D SDE C E
Sbjct: 36 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRGE 84
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 37.5 bits (83), Expect = 0.006
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 142
C + C +G+CI K C+G+ DC ++SDE
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDE 623
Score = 33.9 bits (74), Expect = 0.077
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN--QCVLPDC 217
C + C CI C+G DC D SDE C PN + C + QC +C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 154
C + C +G+CI + C+ DC D SDE AC+
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACS 169
Score = 35.9 bits (79), Expect = 0.019
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 44 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
+C + K C +G C+ + C+G DC+D +DE C
Sbjct: 98 VCSQFK--CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C G+ C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 226
C + C SG CI C+G +C D SDE+ C + N C +CV C
Sbjct: 209 CAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC--KCFTNEL-TCSSGRCVQSINLC- 264
Query: 227 ADGTR 241
DG R
Sbjct: 265 -DGVR 268
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C +L C SG C++ C+G DC+ DE C
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRC 279
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 35.9 bits (79), Expect = 0.019
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 47 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 157
C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 125
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 47 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 151
C + C +G CI + C+ DC D+ DE C
Sbjct: 23 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 58
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 35.9 bits (79), Expect = 0.019
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 47 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 157
C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 11 KVLPILKTDEPI-CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENAC 151
K PI + DE C K C +G C+ C+ DC D DE+ C
Sbjct: 934 KNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHNC 982
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 47 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 151
C + C +G CI + C+ DC D+ DE C
Sbjct: 836 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 871
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 35.9 bits (79), Expect = 0.019
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
CP + C + C+ + C+G DC D SDE C
Sbjct: 21 CPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKNC 55
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 145
C + CG+ CI + C+G DC D SDE+
Sbjct: 65 CGIEEFDCGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 35.1 bits (77), Expect = 0.034
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +2
Query: 44 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 151
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 35.1 bits (77), Expect = 0.034
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 187
C +L C SG C+ C+G DC+ DE C + P + +C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNSLNC 276
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C SG CI C+ +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 34.7 bits (76), Expect = 0.044
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 68 CGSGDCIEKELFCNGKPDCKDESDENACT 154
C +G+CI + C+ DC D SDE AC+
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACS 35
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C G+ C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 34.7 bits (76), Expect = 0.044
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C +L C SG C+ C+G DC+ + DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C SG CI C+ +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C G+ C + CI + C+ DC D SDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 33.5 bits (73), Expect = 0.10
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 68 CGSGDCIEKELFCNGKPDCKDESDENAC 151
C +G I + C+G+ DC+D SDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
Score = 33.5 bits (73), Expect = 0.10
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C +G C+ + C+ DC D SDE C
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQC 152
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C SG CI C+ +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C +L C SG C+ C+G DC+ DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 23 ILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVEL-DPNRAPDCDPNQ 199
+ + D +C +G+ C G+C + +C+ +D + CTV +P + C P +
Sbjct: 521 VYQPDNTVCDKGRRVCSVGECAKSICTKYALEECQCTADNDLCTVCCKEPGKDDTCTPTR 580
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 50 PEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 154
P+ C +G CI C+ + DC D SDE C+
Sbjct: 8 PDTSFKCDNGRCISATWVCDTENDCGDNSDEMNCS 42
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 33.9 bits (74), Expect = 0.077
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 41 PICPEGKLACGS-GDCIEKELFCNGKPDCKDESDE 142
P C G+ C S G CI + C+G DC+D DE
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.5 bits (73), Expect = 0.10
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C + C SG CI C+ +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 47 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 151
C +L C SG C+ C+G DC+ DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 68 CGSGDCIEKELFCNGKPDCKDESDENAC 151
C + + I+ + C+G DC D SDE+ C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 187
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 2010 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 2050
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 187
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 16 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 56
>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 128 DESDENACTVELDPNRAPDCDPNQCV 205
D+ D+ C +P++ PD D ++CV
Sbjct: 410 DQGDQGECVTVPEPDQVPDSDRDECV 435
>SB_44236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 310 VDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRQGHE 453
VD LY F +H N +I + H Y N +LH G++
Sbjct: 337 VDTRLLYLAAFPSAKHQQNLARILNELHIKHDYNNNFLSDQLHNAGND 384
>SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4)
Length = 178
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 62 LACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 232
+ CGS + + C DC E D C E D DC ++ D C++D
Sbjct: 2 IRCGSDEDCASDEDCASDEDCASEED---CASEEDCGSDDDCASDEDCASDEDCASD 55
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 250 WNEPNQVPQMVTITFNGAVNVDNIDLYEQIFNG 348
W E + VT +NG N D D YE+ ++G
Sbjct: 645 WLETSVTSTSVTADWNGDSNADQEDYYEEAWDG 677
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.5 bits (58), Expect = 6.7
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 29 KTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQC- 202
+T +P CP + C +G+C L N KPDC + ++ PN C P+ C
Sbjct: 1443 ETCKPECP---VKCCTGECPAGCLPSNCKPDCPSKCCLTILEPLQEGPNATAYC-PSDCF 1498
Query: 203 --VLPDC---FCSADGTRIPGGMNQ 262
P+C C A + P G ++
Sbjct: 1499 ESCKPNCPIKCCPATAIKCPVGCSE 1523
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 213 SGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSG 115
SG+T+ G SG FGSS T F S L +G
Sbjct: 362 SGQTNCFGGSSGGGFGSSMT-NGFGGASGLTNG 393
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 68 CGSGDCIEKELFCNGKPDCKDESDENAC-TVELD-PNRAPDCDPNQCVLPDCFCSADGTR 241
C G C +L CN + +CK E C T+ N +C NQC + C++D R
Sbjct: 387 CERGKC---QLRCNTRENCKQTCKEGKCLTMSCKAKNCDQECPGNQCRMA---CTSDKCR 440
>SB_47693| Best HMM Match : TSP_1 (HMM E-Value=2.3e-09)
Length = 168
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 68 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCD 190
CG+G E+ C G +C ++E C V+ P+ + D D
Sbjct: 16 CGAGGKRERSRTCQGGSNCPGSANEVEMCDVQRCPHCSHDLD 57
>SB_43730| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
Length = 303
Score = 27.1 bits (57), Expect = 8.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +2
Query: 35 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPD 214
DEP P+ + C + + ++ C PD K + CT + P C P++ PD
Sbjct: 84 DEPHKPD--IPCTPDEPYKPDIPCT--PD-KPHKPDKPCTPDKPPKPDIPCTPDKPHKPD 138
Query: 215 CFCSADGTRIP 247
C+ D P
Sbjct: 139 IPCTPDKPHKP 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,861
Number of Sequences: 59808
Number of extensions: 345620
Number of successful extensions: 1080
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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