Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00360
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +1

Query: 295 NGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQELHRQGHEISVFSIT 474
           N  V + +++ Y  I   N  +        TF    +YT Y    E       I   +++
Sbjct: 197 NTWVYIADVEGYALIIYNNADDSFQRLTSSTFVYDPRYTKYTINDESFSLQDGILGMALS 256

Query: 475 HKDDPQYWTS 504
           HK    Y+++
Sbjct: 257 HKTQNLYYSA 266


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 426 YSCIVSILV*DEKRSFNLTTVRI 358
           YSC+   L+    R+F  TTV I
Sbjct: 287 YSCLKVDLIFTRDRAFYFTTVFI 309


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 426 YSCIVSILV*DEKRSFNLTTVRI 358
           YSC+   L+    R+F  TTV I
Sbjct: 256 YSCLKVDLIFTRDRAFYFTTVFI 278


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 426 YSCIVSILV*DEKRSFNLTTVRI 358
           YSC+   L+    R+F  TTV I
Sbjct: 307 YSCLKVDLIFTRDRAFYFTTVFI 329


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 426 YSCIVSILV*DEKRSFNLTTVRI 358
           YSC+   L+    R+F  TTV I
Sbjct: 256 YSCLKVDLIFTRDRAFYFTTVFI 278


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 277  FEVLDLVHSTW 245
            F VLDLV +TW
Sbjct: 1519 FVVLDLVPATW 1529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,655
Number of Sequences: 438
Number of extensions: 3264
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)