Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00360
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    29   2.4  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    29   2.4  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    28   4.2  
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote...    27   5.5  
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain...    27   7.3  
At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /...    27   9.6  

>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -2

Query: 141 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSS 34
           SSDSSL       NNS S  SPLP +  P  +I SS
Sbjct: 18  SSDSSLNPSSEHGNNSSSSLSPLPSS--PPSRISSS 51


>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 198 WLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQ-NNSFSMQSPLPQANLPSGQIGSSV 31
           W  + + A +   +   A  +D+S  +G  LQ +NSF  ++  PQA   +   G SV
Sbjct: 561 WASTSANAYYTPRANASASYTDTSALAGRSLQQSNSFPTRAGDPQATSTASNSGVSV 617


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = -2

Query: 249 PGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSL--QSGLPLQNNSFSMQSP 76
           PG    S     S  T   G+ S  LFGSSS+    +S +     SG    NN+FS    
Sbjct: 194 PGFGASSTPAFGSTNTPAFGASSTPLFGSSSSPAFGASPAPAFGSSGNAFGNNTFSSGGA 253

Query: 75  LPQANLPS-GQIGSSVF 28
              ++ P+ G   +S F
Sbjct: 254 FGSSSTPTFGASNTSAF 270


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1167

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +1

Query: 250 WNEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYTNYAAVQ 429
           W E    P++  +  N +  ++N+    Q  N  R N  GC    T  +  +  N A++ 
Sbjct: 658 WREEKDAPKLRWVDLNHSSKLENLSGLSQALNLERLNLEGCTALKTLLLGPE--NMASLV 715

Query: 430 ELHRQG 447
            L+ +G
Sbjct: 716 FLNLKG 721


>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinases
          Length = 1032

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +2

Query: 53  EGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCF 220
           +G L C +G      LFC  K        E         N A DC P  C  PD +
Sbjct: 457 DGNLICTNGSISNANLFCESK------GKEWISLPNNSTNSALDCPPLACPTPDFY 506


>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1362

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 26  LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENA 148
           LKTD PIC E  L   +  CIE+ L+ +   D  D   +NA
Sbjct: 559 LKTDTPICIEDHLTALNLRCIER-LYSDHGLDVLDLLKKNA 598


>At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 406

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -2

Query: 318 VVNIHSTVKCNSNH-LRYLIWFIPPGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTV 151
           + N+    K   NH L Y+ W  PP        Q+  G+    GS  G  F  + TV
Sbjct: 284 ICNVPEFSKTAVNHDLHYIAWDKPPRQHPRMLSQRDMGKMISSGSAFGRKFRRNDTV 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,718
Number of Sequences: 28952
Number of extensions: 230838
Number of successful extensions: 712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)