Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00358
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 161 7e-40
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 78 6e-15
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 42 4e-04
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460... 36 0.034
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 34 0.14
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 29 3.9
09_02_0397 - 8549273-8549380,8549718-8549765,8549875-8549964,855... 28 6.8
03_01_0087 - 704715-705347,705423-706349 28 6.8
02_02_0127 - 7038149-7038292,7038380-7038697,7038781-7038879,703... 28 6.8
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 28 9.0
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 161 bits (390), Expect = 7e-40
Identities = 73/103 (70%), Positives = 84/103 (81%), Gaps = 1/103 (0%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAG 427
I +P+IMSPL+K+HR PGLTERFE++V K E+CNAYTELNDP QR+RFEEQ K+R +G
Sbjct: 488 INHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFEEQLKDRQSG 547
Query: 428 DDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIK 553
DDE DE FCTALEYGLPPTGG G +DRLTM LTDS NIK
Sbjct: 548 DDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIK 590
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +3
Query: 9 VEIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTAR 188
+EIDFTPPF ++ M+ LE + KL P L + EAN +L + C + ++C PP+TT R
Sbjct: 410 IEIDFTPPFRKIDMIEELEAM--AKLNIPKDLSSDEANKYLIDACAKYDVKCPPPQTTTR 467
Query: 189 LLDKLVSVFLEEECINPTFILD 254
LLDKLV FLEE C+NPTFI++
Sbjct: 468 LLDKLVGHFLEETCVNPTFIIN 489
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 78.2 bits (184), Expect = 6e-15
Identities = 58/152 (38%), Positives = 77/152 (50%), Gaps = 41/152 (26%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQ-------------- 385
+ YP +SPL+K HR GLTERFE+++ +EI NA++EL DP Q
Sbjct: 506 LDYPVEISPLAKPHRRYAGLTERFELFICGREIGNAFSELTDPIDQLVFGGFDKLEMQRP 565
Query: 386 -------RERFEEQAK----NRAAGDDETPPTD---------------EAFCTALEYGLP 487
R RFE Q K RAA E T+ E F T+LEYG+P
Sbjct: 566 DLVNMQKRGRFENQIKQHNAKRAAMTKEVKSTEGKHEEDDFSYEVTLDEDFLTSLEYGMP 625
Query: 488 PTGG-GARVDRLTMFLTDSNNIKEVLLFPAMK 580
P G G +DRL M LT+S +I++V+ FP +K
Sbjct: 626 PASGMGLGIDRLVMLLTNSASIRDVIAFPVLK 657
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 42.3 bits (95), Expect = 4e-04
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = +2
Query: 230 YKSDIYI--GYPQIMSPLSKYH-RDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFE 400
Y +D Y+ YP + P D P + F+V+V +EI + ++ P E
Sbjct: 391 YDTDFYMLCRYPSAVRPFYTMPCSDDPRYSNSFDVFVRGEEIISGAQRVHVP----EVLA 446
Query: 401 EQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFP 571
QA+ R G D + A+ A YG PP GG G ++R+ M NI++ LFP
Sbjct: 447 RQAEER--GIDVG--SIAAYVDAFRYGAPPHGGFGVGLERVVMLFCGLGNIRKASLFP 500
>03_02_1019 +
13244003-13245202,13245347-13245493,13245772-13246099,
13246930-13246994
Length = 579
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 467 LYKTLHRLGEFHRHQQHDSWLALRIFRVVSPGHLIRCRH 351
++K LH G + + + W AL FR+ +P H +R RH
Sbjct: 515 MFKMLHPQGSYTDYISNQLWRALEHFRMTTPNHAVRDRH 553
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 473 EYGLPPTGGGAR-VDRLTMFLTDSNNIKEVLLFP 571
+ G PP GG A +DRL M L N+I++V+ FP
Sbjct: 637 DMGAPPHGGIAYGLDRLVMLLAGENSIRDVIAFP 670
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 293 DVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTAL 472
D P + F+V++ +EI + ++ P +R E G D + T ++ +
Sbjct: 456 DNPAYSNSFDVFIRGEEIISGAQRIHLPELLTKRATE------CGIDAS--TISSYIESF 507
Query: 473 EYGLPPTGG-GARVDRLTMFLT 535
YG PP GG G ++R+ + T
Sbjct: 508 SYGAPPHGGFGVGLERVLLLST 529
>09_02_0397 -
8549273-8549380,8549718-8549765,8549875-8549964,
8550479-8550562,8551119-8551280,8551729-8551781,
8552763-8552807,8553840-8553876,8554212-8554320,
8554391-8554818,8554939-8555085
Length = 436
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 431 RHQQHDSWLALRIFRVVSPGHLIRCRHY 348
RH D+W+ L + SPG+L RC H+
Sbjct: 170 RHTMEDAWVLLPDASMESPGNL-RCAHF 196
>03_01_0087 - 704715-705347,705423-706349
Length = 519
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 389 ERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGGGARVDRLTMFLTDSNNIKEVLL 565
+R ++ + AGD++ D+ E G TGGG + T+ LT +NIK +++
Sbjct: 253 DRIIDEHVSNPAGDEDADMVDDMLAFLDEAGRDQTGGGGELQG-TLRLT-RDNIKAIIM 309
>02_02_0127 -
7038149-7038292,7038380-7038697,7038781-7038879,
7038958-7039050,7039138-7039341,7039435-7039525,
7039593-7039695,7039761-7039907,7040825-7040876,
7041003-7041138,7041846-7041911,7041981-7042045
Length = 505
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 528 NIVKRSTRAPPPVGGRPYSR 469
++V + T APPP GRPYSR
Sbjct: 51 SVVVQITFAPPPSLGRPYSR 70
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 476 YG-LPPTGGGARVDRLTMFLTDSNNIKEVLLFP 571
YG +P G G +RL F T +NI++ + FP
Sbjct: 513 YGSVPHAGFGLGFERLVQFATGMDNIRDTIPFP 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,736,384
Number of Sequences: 37544
Number of extensions: 533380
Number of successful extensions: 1342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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