Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00358
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 7e-40
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 43 3e-04
SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061) 29 3.0
SB_59677| Best HMM Match : RVT_1 (HMM E-Value=2.1e-28) 29 4.0
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_33701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56635| Best HMM Match : rve (HMM E-Value=0.0073) 29 4.0
SB_29114| Best HMM Match : rve (HMM E-Value=1.9e-23) 29 4.0
SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1) 28 6.9
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18) 28 6.9
SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_18283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 161 bits (390), Expect = 7e-40
Identities = 76/103 (73%), Positives = 86/103 (83%), Gaps = 1/103 (0%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAG 427
I +P+IMSPLSK+HR GLTERFE++V KEICNAYTELNDP QRERFE+QAK++AAG
Sbjct: 960 IDHPEIMSPLSKWHRKEKGLTERFELFVCCKEICNAYTELNDPMVQRERFEQQAKDKAAG 1019
Query: 428 DDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIK 553
DDE DE FCT+LE+GLPPT G G VDRLTMFLTDSNNIK
Sbjct: 1020 DDEAMFVDENFCTSLEFGLPPTAGWGLGVDRLTMFLTDSNNIK 1062
Score = 116 bits (279), Expect = 2e-26
Identities = 48/80 (60%), Positives = 64/80 (80%)
Frame = +3
Query: 15 IDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLL 194
+DFTPPF R+ M+ LE+VL V+LP+P +TPEAN L+ LC H+++C+PPRTTARLL
Sbjct: 882 VDFTPPFKRLRMIPELEKVLGVRLPSPQDFNTPEANKLLDQLCVKHEVDCAPPRTTARLL 941
Query: 195 DKLVSVFLEEECINPTFILD 254
DKLV FLE +C++PTFI+D
Sbjct: 942 DKLVGEFLESQCVSPTFIID 961
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Frame = +2
Query: 230 YKSDIYI--GYPQIMSPLSKYHRDV-PGLTERFEVYVAKKEICNAYTELNDPATQRERFE 400
Y +D +I YP + P P ++ +++++ +E+ + ++DP
Sbjct: 362 YDTDFFILDKYPLCIRPFYTMPDPFNPNVSNSYDMFIRGEEVLSGAQRIHDP-------- 413
Query: 401 EQAKNRAAGDDETPPTDEAFCTALEYGLPP-TGGGARVDRLTMFLTDSNNIKEVLLFP 571
E+ K RA+ T +++ + YG PP GGG + R+ M D +N+++ +FP
Sbjct: 414 EKLKERASHHGIDLETIKSYIDSFRYGAPPHAGGGIGLARVVMLYLDLHNVRKSSMFP 471
>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
Length = 1445
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +2
Query: 386 RERFEEQAKNRAAGDDETPPT-DEAFCT-ALEYGLPPTGGGARVDRLTMFLTDSNNIKEV 559
R F Q +N + E +E FC A +Y P G +RL F+ + ++E
Sbjct: 188 RYEFNIQGENISQNPTEIANAFNEFFCNVASKYRATPPGTSTCFERLKTFVGQTLKLEEC 247
Query: 560 LLFPAMKPD 586
P M PD
Sbjct: 248 FSIPEMTPD 256
>SB_59677| Best HMM Match : RVT_1 (HMM E-Value=2.1e-28)
Length = 1159
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 299 PGLTERFEVYVAKKEICNAY 358
PG+ + E YVAK EICN++
Sbjct: 807 PGMNKEVEEYVAKCEICNSH 826
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 299 PGLTERFEVYVAKKEICNAY 358
PG+ + E YVAK EICN++
Sbjct: 1640 PGMNKEVEEYVAKCEICNSH 1659
>SB_33701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 974
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 299 PGLTERFEVYVAKKEICNAY 358
PG+ + E YVAK EICN++
Sbjct: 677 PGINKEVEEYVAKCEICNSH 696
>SB_56635| Best HMM Match : rve (HMM E-Value=0.0073)
Length = 267
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 311 ERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTAL 472
+R +V+ + + YT+ P T F EQ NR D PTD + AL
Sbjct: 46 DRVRKWVSSQPV-GGYTQTPPPPTTYAHFSEQIPNRIHSDLLFSPTDRGYKYAL 98
>SB_29114| Best HMM Match : rve (HMM E-Value=1.9e-23)
Length = 365
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 299 PGLTERFEVYVAKKEICNAY 358
PG+ + E YVAK EICN++
Sbjct: 111 PGMNKEVEEYVAKCEICNSH 130
>SB_20189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 449 DEAFCT-ALEYGLPPTGGGARVDRLTMFLTDSNNIKEVLLFPAMKPD 586
+E FC A +Y P G +RL F+ + ++E P M PD
Sbjct: 196 NEFFCNVASKYRATPPGTSTCFERLKTFVGQTLKLEECFSIPEMTPD 242
>SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)
Length = 395
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 42 VPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARLLDKLVSVFLE 221
V + +L R V L +P +FL+ C +H +P A ++ L+S+FL+
Sbjct: 70 VMITMSLSRAFLVSHERGFSLSSPYVQEFLHVTCFSHGEIQNPDVLKALIISNLISLFLD 129
Query: 222 EECINP 239
+ P
Sbjct: 130 LVMLQP 135
>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
Length = 563
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 401 EQAKNRAAGDDETPPTDEAFCTAL--EYGLPPTGGGARVDRLTMFLTDSNNI 550
+ A+ R AG TP F TAL G+P ARV +TM+ TDSN +
Sbjct: 51 QSARERKAGARRTPEPHVRFFTALASRAGVPCAVHNARV-TITMY-TDSNGL 100
>SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 142 ATLIRLSARHRGPPRGSWINWFLYF---WRRSV*IRHLYWI 255
ATL+ + R GPP G ++ LY WR++ + +W+
Sbjct: 958 ATLLTMKTRPAGPPPGQFLPVDLYARRRWRQTQYLAEQFWV 998
>SB_18283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 509 VDRLTMFLTDSNNIKEVLLFP 571
+DRL M L NI+EV+ FP
Sbjct: 8 LDRLAMLLAGQENIREVIAFP 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,415,450
Number of Sequences: 59808
Number of extensions: 594475
Number of successful extensions: 1330
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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