Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00358
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 185 3e-47
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 185 3e-47
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 185 3e-47
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 35 0.070
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 34 0.12
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 29 2.6
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 29 2.6
AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical... 28 6.0
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 28 6.0
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 28 6.0
U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 185 bits (451), Expect = 3e-47
Identities = 83/118 (70%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAG 427
IG+PQIMSPL+K+HR +PGLTERFE++ +EI NAYTELNDP TQR+RFE+QAK++ AG
Sbjct: 385 IGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDKDAG 444
Query: 428 DDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFPAMKPDDPTK 598
DDE DE FC ALEYGLPPTGG G +DRL+M LTD+NNIKEVLLFPAM+P+D T+
Sbjct: 445 DDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFPAMRPEDGTE 502
Score = 88.6 bits (210), Expect = 4e-18
Identities = 41/80 (51%), Positives = 51/80 (63%)
Frame = +3
Query: 12 EIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARL 191
E+DFTPPF RV M L L LP P L T EA + + LC + ++CS PRTTARL
Sbjct: 306 EVDFTPPFKRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARL 365
Query: 192 LDKLVSVFLEEECINPTFIL 251
LDKLV +LE I+PTF++
Sbjct: 366 LDKLVGEYLESTFISPTFLI 385
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 185 bits (451), Expect = 3e-47
Identities = 83/118 (70%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAG 427
IG+PQIMSPL+K+HR +PGLTERFE++ +EI NAYTELNDP TQR+RFE+QAK++ AG
Sbjct: 467 IGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDKDAG 526
Query: 428 DDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFPAMKPDDPTK 598
DDE DE FC ALEYGLPPTGG G +DRL+M LTD+NNIKEVLLFPAM+P+D T+
Sbjct: 527 DDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFPAMRPEDGTE 584
Score = 88.6 bits (210), Expect = 4e-18
Identities = 41/80 (51%), Positives = 51/80 (63%)
Frame = +3
Query: 12 EIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARL 191
E+DFTPPF RV M L L LP P L T EA + + LC + ++CS PRTTARL
Sbjct: 388 EVDFTPPFKRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARL 447
Query: 192 LDKLVSVFLEEECINPTFIL 251
LDKLV +LE I+PTF++
Sbjct: 448 LDKLVGEYLESTFISPTFLI 467
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 185 bits (451), Expect = 3e-47
Identities = 83/118 (70%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAG 427
IG+PQIMSPL+K+HR +PGLTERFE++ +EI NAYTELNDP TQR+RFE+QAK++ AG
Sbjct: 443 IGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQRFEQQAKDKDAG 502
Query: 428 DDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFPAMKPDDPTK 598
DDE DE FC ALEYGLPPTGG G +DRL+M LTD+NNIKEVLLFPAM+P+D T+
Sbjct: 503 DDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFPAMRPEDGTE 560
Score = 88.6 bits (210), Expect = 4e-18
Identities = 41/80 (51%), Positives = 51/80 (63%)
Frame = +3
Query: 12 EIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTARL 191
E+DFTPPF RV M L L LP P L T EA + + LC + ++CS PRTTARL
Sbjct: 364 EVDFTPPFKRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARL 423
Query: 192 LDKLVSVFLEEECINPTFIL 251
LDKLV +LE I+PTF++
Sbjct: 424 LDKLVGEYLESTFISPTFLI 443
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 34.7 bits (76), Expect = 0.070
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 452 EAFCTALEYGLPP-TGGGARVDRLTMFLTDSNNIKEVLLFP 571
+++ + +YG PP GGG ++R+TM +NI+ LFP
Sbjct: 483 QSYIDSFKYGCPPHAGGGIGLERVTMLFLGLHNIRLASLFP 523
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 473 EYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFP 571
+YG P GG G ++R +LTD+N+I++V L+P
Sbjct: 504 KYGSVPHGGYGLGLERFICWLTDTNHIRDVCLYP 537
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +2
Query: 338 KEICNA---YTELND---PATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG 499
K +CNA Y L+ P R+ F +Q R +DE P T +A + GLP
Sbjct: 283 KLVCNACGLYYRLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMAN 342
Query: 500 GARVDRLTMFLTDSNNIKE 556
G + LT FL N + +
Sbjct: 343 GG-ANALT-FLEQINQLNQ 359
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +2
Query: 338 KEICNA---YTELND---PATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG 499
K +CNA Y L+ P R+ F +Q R +DE P T +A + GLP
Sbjct: 283 KLVCNACGLYYRLHRTHRPVHMRKDFIQQRFRRRMREDENPATSQAAVFSQLLGLPSMAN 342
Query: 500 GARVDRLTMFLTDSNNIKE 556
G + LT FL N + +
Sbjct: 343 GG-ANALT-FLEQINQLNQ 359
>AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical
protein Y111B2A.4 protein.
Length = 459
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 338 KEICNAYTELNDPATQRERFEEQ-AKNRAAGDDETPPTDEAFCTALEY 478
KE+ NAYTELN+ + E F+EQ + A +D D +EY
Sbjct: 300 KELANAYTELNE---EFEGFKEQHTATQNANNDLNRRIDSLKANLIEY 344
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 290 RDVPGLTER-FEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEA 457
RD+ + ++ E+ +KE A EL D Q+E+FE+ K A G T T+ A
Sbjct: 1000 RDLQTIRQQSIEIVEREKERDRARKELEDVTRQKEKFEKDKK--AVGGQLTSMTERA 1054
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 290 RDVPGLTER-FEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEA 457
RD+ + ++ E+ +KE A EL D Q+E+FE+ K A G T T+ A
Sbjct: 1000 RDLQTIRQQSIEIVEREKERDRARKELEDVTRQKEKFEKDKK--AVGGQLTSMTERA 1054
>U29614-8|AAA68812.2| 395|Caenorhabditis elegans Hypothetical
protein F18E9.7 protein.
Length = 395
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 356 YTELNDPATQRERFEEQAKNRAAGDDETPPTDE 454
Y LN+P+T+RE E ++A +D+T D+
Sbjct: 181 YQPLNNPSTKREALEFLKHLKSASEDKTLTVDD 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,946
Number of Sequences: 27780
Number of extensions: 442229
Number of successful extensions: 1150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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