Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00358
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    25   0.56 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    25   0.56 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   7.0  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 TPEANDFLNNLCNTHQIECSP-PRTTARLLDKLVSVFLEEE 227
           TP+A +   NL +  + ECSP      ++ DK+V   ++ +
Sbjct: 57  TPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNK 97


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 TPEANDFLNNLCNTHQIECSP-PRTTARLLDKLVSVFLEEE 227
           TP+A +   NL +  + ECSP      ++ DK+V   ++ +
Sbjct: 57  TPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLIDNK 97


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 96   DKLDTPEANDFLNNLCNTHQIECSPPRTTARLLD 197
            D LDT + +  +NN+    +  C   +T A+  D
Sbjct: 1422 DILDTADEDLLINNVFYEDETSCMLDKTRAQTFD 1455


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 642 FELMFVHPHLFFCMVFVGSSGFIA 571
           F +MF+H      ++F+ S+  IA
Sbjct: 5   FSIMFIHSIFLILIIFIYSNETIA 28


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 240  SDLYTPPPEIQKPIYPRASRWSSVAS 163
            SD+     +  KPI P A+R+  VA+
Sbjct: 1449 SDMLNTRTKGSKPIIPEAARFIEVAT 1474


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 642 FELMFVHPHLFFCMVFVGSSGFIA 571
           F +MF+H      ++F+ S+  IA
Sbjct: 5   FSIMFIHSIFLILIIFIYSNETIA 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,489
Number of Sequences: 438
Number of extensions: 5703
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)