Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00358
(740 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 162 3e-40
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f... 99 3e-21
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as... 50 1e-06
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as... 39 0.003
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as... 39 0.003
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f... 34 0.11
At5g39830.2 68418.m04825 DegP protease, putative contains simila... 32 0.35
At5g39830.1 68418.m04824 DegP protease, putative contains simila... 32 0.35
At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas... 31 1.1
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 29 4.3
At4g11450.1 68417.m01843 expressed protein 29 4.3
At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c... 28 5.7
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c... 28 5.7
At1g70570.1 68414.m08125 anthranilate phosphoribosyltransferase,... 28 5.7
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 28 7.5
At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate synth... 28 7.5
At3g48390.1 68416.m05282 MA3 domain-containing protein similar t... 27 9.9
At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing ... 27 9.9
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 162 bits (393), Expect = 3e-40
Identities = 74/113 (65%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAAG 427
I P+IMSPL+K+HR GLTERFE+++ K E+CNAYTELNDP QR+RF +Q K+R +G
Sbjct: 497 INQPEIMSPLAKWHRSKSGLTERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSG 556
Query: 428 DDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFPAMKP 583
DDE DE FC ALEYGL PTGG G +DRL+M LTDS NIKEVL FPAM+P
Sbjct: 557 DDEAMALDETFCNALEYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFPAMRP 609
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/82 (53%), Positives = 57/82 (69%)
Frame = +3
Query: 9 VEIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPPRTTAR 188
+EIDFTPPF R+ M+ LE+V KL P L + EAN +L + C ++C PP+TTAR
Sbjct: 419 IEIDFTPPFRRIEMIGELEKV--AKLNIPKDLASEEANKYLIDACARFDVKCPPPQTTAR 476
Query: 189 LLDKLVSVFLEEECINPTFILD 254
LLDKLV FLE C+NPTFI++
Sbjct: 477 LLDKLVGEFLEPTCVNPTFIIN 498
>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
family protein similar to SP|Q9RHV9 Lysyl-tRNA
synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
stearothermophilus}; contains Pfam profile: PF00152 tRNA
synthetases class II (D, K and N)
Length = 602
Score = 99.1 bits (236), Expect = 3e-21
Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 21/132 (15%)
Frame = +2
Query: 248 IGYPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFEEQAKNRAA- 424
+ YP +SPL+K HR GLTERFE+++ +E+ NA++EL DP QR R EEQ + A
Sbjct: 468 LDYPIEISPLAKPHRGNAGLTERFELFICGREMANAFSELTDPVDQRTRLEEQVRQHNAK 527
Query: 425 -----------------GDDET--PPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSN 544
DDE+ DE F TALEYG+PP G G +DRL M LT+S
Sbjct: 528 RAEAVRESPEPNAKKDDDDDESYEVTLDEDFLTALEYGMPPASGMGLGIDRLVMLLTNSA 587
Query: 545 NIKEVLLFPAMK 580
+I++V+ FP +K
Sbjct: 588 SIRDVIAFPVLK 599
>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative simialr to
aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
synthetases class II (D, K and N)
Length = 532
Score = 50.4 bits (115), Expect = 1e-06
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Frame = +2
Query: 230 YKSDIYI--GYPQIMSPL--SKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERF 397
YK++ Y+ YP + P Y D + F+V++ +EI + ++DP E
Sbjct: 415 YKTEFYMLHRYPSAVRPFYTMPYEND-SNYSNSFDVFIRGEEIMSGAQRIHDP----ELL 469
Query: 398 EEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFP 571
E++A R G D T + A YG PP GG G ++R+ M L NNI++ LFP
Sbjct: 470 EKRA--RECGIDVK--TISTYIDAFRYGAPPHGGFGVGLERVVMLLCALNNIRKTSLFP 524
>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +2
Query: 230 YKSDIYI--GYPQIMSPL-SKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFE 400
Y ++ YI YP+ + P + D P + F+V++ +EI + QR
Sbjct: 441 YNTEFYILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGEEIISG--------AQRVHIP 492
Query: 401 EQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFP 571
E + RA T + + YG P GG G ++R+ M NNI++ LFP
Sbjct: 493 EVLEQRAGECGIDVKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFP 550
>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative similar to
Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
(AspRS) [Homo sapiens] GI:20178330
Length = 558
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +2
Query: 230 YKSDIYI--GYPQIMSPL-SKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERFE 400
Y ++ YI YP+ + P + D P + F+V++ +EI + QR
Sbjct: 441 YNTEFYILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGEEIISG--------AQRVHIP 492
Query: 401 EQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG-GARVDRLTMFLTDSNNIKEVLLFP 571
E + RA T + + YG P GG G ++R+ M NNI++ LFP
Sbjct: 493 EVLEQRAGECGIDVKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNIRKTSLFP 550
>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
family protein similar to SP|P36419 Aspartyl-tRNA
synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
(AspRS) {Thermus thermophilus}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 664
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 467 ALEYGLPPTGGGAR-VDRLTMFLTDSNNIKEVLLFP 571
AL+ G PP GG A +DR+ M L +++I++V+ FP
Sbjct: 600 ALDMGAPPHGGIAYGLDRMVMMLGGASSIRDVIAFP 635
>At5g39830.2 68418.m04825 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 434
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 144 NTHQIEC-SPPRTTARLLDKLVSVFLEEECINPTFILDILRL*VPSLSTIE 293
N H++ S P TT R+L L S+F+ C NP+ L L L PS++T+E
Sbjct: 53 NLHELAVKSVPSTTRRIL--LTSLFMNL-CFNPSRYLSALALGDPSVATVE 100
>At5g39830.1 68418.m04824 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 448
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 144 NTHQIEC-SPPRTTARLLDKLVSVFLEEECINPTFILDILRL*VPSLSTIE 293
N H++ S P TT R+L L S+F+ C NP+ L L L PS++T+E
Sbjct: 53 NLHELAVKSVPSTTRRIL--LTSLFMNL-CFNPSRYLSALALGDPSVATVE 100
>At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast,
mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO)
nearly identical to SP|O48593
Length = 567
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +2
Query: 398 EEQAKNRAAGDDETPPTDEAFCTALE---YG-LPPTGGGARVDRLTMFLTDSNNIKEVLL 565
EE+ + A DE E++ L+ YG +P G G +RL F+T +NI++V+
Sbjct: 498 EERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIP 557
Query: 566 FP 571
FP
Sbjct: 558 FP 559
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 341 EICNAYTELNDPATQRERFEEQAKNRAAGDDETPPTDEAFCTALEYGL 484
E+ A EL D +R+RF+E N+ + TP + + E L
Sbjct: 313 EVEFAQGELRDDQVERQRFDETVSNQERSSNSTPESGNYIVSPRELSL 360
>At4g11450.1 68417.m01843 expressed protein
Length = 694
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 597 FVGSSG--FIAGNNNTSL-ILFESVRNIVKRSTRAPPPVGGRPYSRAVQNA 454
++G SG F G N+ + NI KRS PPPV + Y+ ++++
Sbjct: 222 YIGESGDQFKLGRNSERCRSMLSDYSNIHKRSNLCPPPVVNKDYTSVLKSS 272
>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 116 FRCIKFIGCWEFHVK--NTFQCCHHRYSSKGWCEIDF 12
F C K +G F K +TF C HRY K C DF
Sbjct: 117 FSCNKKVGVMGFKCKCGSTF-CGSHRYPEKHECSFDF 152
>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -1
Query: 116 FRCIKFIGCWEFHVK--NTFQCCHHRYSSKGWCEIDF 12
F C K +G F K +TF C HRY K C DF
Sbjct: 117 FSCNKKVGVMGFKCKCGSTF-CGSHRYPEKHECSFDF 152
>At1g70570.1 68414.m08125 anthranilate phosphoribosyltransferase,
putative similar to anthranilate
phosphoribosyltransferase (EC 2.4.2.18) SP:O66576 from
[Aquifex aeolicus]
Length = 595
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +2
Query: 359 TELNDPATQRERF--EEQAKNRAAGDDETPPTDEAFCTALEYGLPPTGG--GARVDRLTM 526
T L R+ F E A+N ETP TD + +E GL G GA DR+ +
Sbjct: 488 TALEADGVSRQSFNLEVDARNYGFEPTETPRTDRSVSKNIELGLAALRGEKGAAYDRIVL 547
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 527 FLTDSNNIKEVLLFPAMKPDDPTKTIQKKRCGCTNISSNG 646
FLT EVL +P++KP D T T C C I G
Sbjct: 165 FLTTGLGTVEVLSYPSLKPLD-TLTAHTAGCYCIAIDPKG 203
>At1g62960.1 68414.m07109 1-aminocyclopropane-1-carboxylate
synthase, putative / ACC synthase, putative similar to
GI:1173638 [GB:U35779] from [Triticum aestivum] (Plant
Mol. Biol. 31 (5), 1009-1020 (1996)), GI:1813331 from
Vigna radiata
Length = 557
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 521 SNGLPEPHRRSAAGHILEL 465
++GLP+P R +AGH+ EL
Sbjct: 91 NSGLPDPTRSQSAGHLTEL 109
>At3g48390.1 68416.m05282 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 633
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 209 CISGGGVYKSDIYIGYPQIMSPLSKYHRDVPGLTERFEVYVAKKE 343
C + G + + + G+ ++ L D+P E+F YVA E
Sbjct: 574 CFAEGIITTNQMTKGFGRVKDSLDDLSLDIPNAEEKFNSYVAHAE 618
>At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing
protein identical to H-protein promoter binding
factor-2a GI:3386546 from [Arabidopsis thaliana]
Length = 448
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 90 APDKLDTPEANDFLNNLCNTHQIECSPPRT 179
+P+K+ TPE +D NN CN + S P T
Sbjct: 44 SPEKV-TPELSDKNNNNCNDNSFNNSKPET 72
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,821,502
Number of Sequences: 28952
Number of extensions: 413756
Number of successful extensions: 1090
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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