Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00355
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.74 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   0.97 
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   1.7  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   2.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   3.0  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.2  
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    26   5.2  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   6.9  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   9.1  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 363 SYVYDAPSTQPDPDAAKPAHN-PHDRDGAPPTPP 461
           S V   PS QP P AA PA + P D +  PP PP
Sbjct: 163 SMVSPPPSFQP-PSAAAPATSLPSDYNPPPPPPP 195


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 378 APSTQPDPDAAKPAHNPHDRDGAPPTPPRI*STLA 482
           APST P+P  A PA  P+     P T P   S LA
Sbjct: 373 APSTFPNPSVASPAF-PNSSTSNPSTAPASASPLA 406


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTP 458
           PS QP P  + PAHN   +   P +P
Sbjct: 366 PSLQPTPPVSYPAHNVPQKGVRPASP 391


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 393 PDPDAAKPAHNPHDRDGAPPTPPRI*STLAE 485
           PD DA K     H R+  PP P  + S LAE
Sbjct: 439 PDRDARKKIIEIHTRNWDPPVPEWLCSMLAE 469


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 342 RDDGICVSYVYDAPSTQPDPDAAKPAHNP---HDRDGAPPTPP 461
           RD G C S   D+      P + +P  NP    D +G+P T P
Sbjct: 501 RDTGSCTSDDEDSIHEPYRPASTQPTENPPAMPDHNGSPTTEP 543


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 471 STLAEATCSSRVVLPPLNSSYCIINT 548
           S+ A +T SS VV+PP+NSS    +T
Sbjct: 478 SSEAFSTSSSLVVIPPVNSSLVTSST 503


>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 128 FTHRGKGSDFQYLVMGDEMDPCECLWNHELAMRRLISLL 244
           FT+  + S F++L     +DP E  W   + +    SLL
Sbjct: 15  FTNAKRYSSFRFLFPSKNLDPNETKWGWNIRIATFRSLL 53


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 375 DAPSTQPDPDAAKP 416
           DAP   PDPDA KP
Sbjct: 273 DAPRMIPDPDAVKP 286


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 411 KPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVLPPLNSSYCIINT 548
           K A N +   G   T     S +++A   SR  LPPL S    +NT
Sbjct: 369 KVAVNRYIHRGPSATSLNKFSMISDAASKSRAKLPPLTSGSLKLNT 414


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 375 DAPSTQPDPDAAKP 416
           + P+TQPD  AAKP
Sbjct: 291 EVPTTQPDASAAKP 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,421
Number of Sequences: 5004
Number of extensions: 48547
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)