Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00355
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0196 + 1559190-1560395 38 0.005
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 34 0.11
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 32 0.44
07_01_0466 - 3518315-3521428 31 1.0
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 31 1.0
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 30 1.3
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 30 1.8
02_02_0741 + 13590883-13591582,13591955-13592250 29 2.3
03_05_0625 - 26225201-26225879,26226706-26227553 28 5.4
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 28 5.4
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 28 7.1
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 27 9.4
12_02_0320 - 17504511-17505016,17505757-17506147 27 9.4
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 27 9.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 9.4
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 27 9.4
06_02_0203 + 12986685-12988691 27 9.4
04_04_0430 - 25153572-25154060 27 9.4
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 27 9.4
01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178 27 9.4
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 9.4
>03_01_0196 + 1559190-1560395
Length = 401
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 375 DAPSTQPDPDAAKPAHNPHDRDGAPPTPP 461
DAP+ P PD A PA +P D +PP PP
Sbjct: 333 DAPAAAPSPDDAAPAPSPSVADASPPAPP 361
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 318 WQQLHHDVRDDGICVSYVYDAPSTQPDPDAAKPAHNPHDRDGAPPTPPRI*STLAEATCS 497
+QQ HH + + +AP+ P P A PA +P R PP PP + + EA +
Sbjct: 349 YQQYHHG------STNAIDEAPAPAPVPAPAPPAESPFQRRWVPPQPPGV--VMPEAVAA 400
Query: 498 SR 503
R
Sbjct: 401 IR 402
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 31.9 bits (69), Expect = 0.44
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 61 ILVNVGTVVSLQNIISNQILFLFHSQRQRK*LSVPSYG--**NGSVRVPLES*AGHAPLN 234
IL+ V +VSL +IS I F + +R+R+ LS+PS+G N S ++ G + N
Sbjct: 596 ILIPVACLVSLAMVIS--IFFTWRGKRKRESLSLPSFGTNFPNFSYNNLFKATEGFSSSN 653
Query: 235 LTASSRPSY 261
L R SY
Sbjct: 654 LIGKGRYSY 662
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 366 YVYDAPSTQPDPDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVLP 515
Y D P P P PA +P + AP PP EA + LP
Sbjct: 137 YYLDEPVAPPPPPPEPPAADPAPAEAAPDAPPADADAAPEAPEKAEEALP 186
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P P P P H PH D PP PP
Sbjct: 121 PPPPPHPPEDPPPHPPHPPDHPPPPPP 147
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P ++P+PD A P P PP PP
Sbjct: 37 PPSRPEPDQAAPPPPPQPHTAPPPPPP 63
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 384 STQPDPDAAKPAHNPHDRDGAPPTPP 461
+T D KP NP+ ++ APP PP
Sbjct: 28 ATSKDRSTPKPRKNPNPKEEAPPPPP 53
>02_02_0741 + 13590883-13591582,13591955-13592250
Length = 331
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 378 APSTQPDPDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVLPPLNSS 530
A + + DP AH+P+ P P RI + + T R+V P + SS
Sbjct: 273 AKAVRRDPQVTSTAHDPNRHLNVQPPPQRI---IVKGTVRGRIVPPAIVSS 320
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 393 PDPDAAKPAH---NPHDRDGAPPTPPR 464
PDPD +PA NP R +PP PPR
Sbjct: 124 PDPDTHRPAIVVVNPATRWCSPPLPPR 150
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 375 DAPSTQPDPDAAKPAHNPHDRDGAPPTPPRI*STLAEAT--CSSRVVLPPLN 524
D P+ + +AAK A P PPRI LA+ + + R LP +N
Sbjct: 15 DVPAQERKGEAAKIARRPKTTTVVAQQPPRIRRALADVSNLVNGRAALPVVN 66
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDR-DGAPPTPP 461
P+ Q P + P H PH + PP PP
Sbjct: 281 PAPQSQPPSQFPGHLPHSQVQSVPPAPP 308
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P QP+P A P+ P ++ P PP
Sbjct: 73 PQPQPEPQPAAPSQPPPPQEQPSPPPP 99
>12_02_0320 - 17504511-17505016,17505757-17506147
Length = 298
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 378 APSTQPDPDAAKPAHNPHDRDGAPPTPPR 464
AP+ P P A PA P APP PP+
Sbjct: 11 APAPAPAP-APAPAAEPQTTGNAPPPPPQ 38
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P P P A P P + G PP PP
Sbjct: 614 PPPPPRPPGAPPPPPPPGKPGGPPPPP 640
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVLPPL 521
P P P KPA +P PP PP S A + PPL
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPL 594
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
PS P P AA P P PP PP
Sbjct: 589 PSPPPAPKAAPPPPPPKSTGPGPPRPP 615
>06_02_0203 + 12986685-12988691
Length = 668
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 336 DVRDDGICVSYVYDAPSTQPDPDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSS 500
D+R++ C++ + D + +AA H+ + APP PP + L T +S
Sbjct: 408 DLRNELRCLAEILD---DDEEEEAASSEAEQHEHNTAPPPPPPLIEALPLFTAAS 459
>04_04_0430 - 25153572-25154060
Length = 162
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 360 VSYVYDAP--STQPDPDAAKPAHNPHDRDGAPPTPP 461
+ Y Y AP + +PDP+A K + APP+PP
Sbjct: 100 IGYQYRAPIRTKKPDPEADKKKEQ--EAAAAPPSPP 133
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGA-PPTPPR 464
PS P P A AH + G+ PP PPR
Sbjct: 47 PSQPPPPQAMYQAHPQYPMPGSLPPPPPR 75
>01_06_1775 - 39808794-39808919,39809021-39809127,39810594-39812178
Length = 605
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 335 MMKLLPADSGCGSPGNC-SRHSLSVQYDGLDEAVRLSGA 222
M+ + A +GCG G C S H+ SV+ GLD V ++ +
Sbjct: 146 MISIAQASAGCGDLGLCESAHAYSVKI-GLDSDVSVTNS 183
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P+ Q P + P H PH + PP PP
Sbjct: 284 PTLQSQPPSQYPGHLPHSQ--VPPVPP 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,467
Number of Sequences: 37544
Number of extensions: 357519
Number of successful extensions: 1354
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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