Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00355
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17672| Best HMM Match : ERM (HMM E-Value=0.13)                      32   0.34 
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)             28   5.5  
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               28   5.5  
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)                 28   7.2  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_17672| Best HMM Match : ERM (HMM E-Value=0.13)
          Length = 391

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/62 (30%), Positives = 23/62 (37%)
 Frame = +3

Query: 276 MPRAITRASTAGVGWQQLHHDVRDDGICVSYVYDAPSTQPDPDAAKPAHNPHDRDGAPPT 455
           +P   T  ST       +  DV  DG CVS  Y    +    +       P  R   PPT
Sbjct: 193 LPSQSTNDSTNQSADAMVSRDVMSDGECVSRGYVGVGSPARRNVVSRVSGPPARGALPPT 252

Query: 456 PP 461
           PP
Sbjct: 253 PP 254


>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +3

Query: 282 RAITRASTAGV-----GWQQLHHDVRDDGICVSYVYDAPSTQ-PDPDAAKPAHNPHDRDG 443
           RA  RAS  G+     G   ++H++R++ +  ++  +    + PD     PA  P     
Sbjct: 745 RASRRASHDGIPRYNPGSPPVNHNMREEQMRKAHARERERAELPDAHEPPPALPPRKHSD 804

Query: 444 APPTPPR 464
            PP PPR
Sbjct: 805 PPPLPPR 811


>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 110  IKYCSYFTHRGKGSDFQYLVMG 175
            I  C+YFTHRG+G    Y+V+G
Sbjct: 1266 ILLCNYFTHRGRGK--AYVVLG 1285


>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 372  YDAPSTQPDPDAAKPAHNPHDRDGAPPTPPRI 467
            Y+AP+  P  +  KP+ NP D   AP  PP +
Sbjct: 2301 YNAPTVSPPTE--KPSGNPTDGTVAPTEPPYV 2330


>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
          Length = 453

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 423 CALVWPHLDLVASRA 379
           C LVWPH  L+ASRA
Sbjct: 177 CVLVWPHNALLASRA 191


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 399 PDAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVLPPL 521
           P  + PA +  +  G PPTPP +   L +   +SR+  PPL
Sbjct: 216 PGPSSPASDSDNSPGTPPTPPTV--RLRKKESASRIP-PPL 253


>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 264  HGKRMPRAITRASTAGVGWQQLHHDVRDDGIC-VSYVYDAPSTQPDPDAAKPAHNPHDRD 440
            H +R+ R + +  +AGV   +   +   + +  + +V D+   +PDP   K    P D D
Sbjct: 946  HDERLERVLKKLESAGVQLNRDKCEFSKNRVTFLGHVVDSDRVRPDPTKIKAIAEPKDID 1005


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 375  DAPSTQPDPDAAKPAHNPHDRDGAPPTPP 461
            +AP   P P  + P+  P     APP PP
Sbjct: 929  NAPLPPPPPGGSAPSQPPPPGGNAPPPPP 957


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,917,149
Number of Sequences: 59808
Number of extensions: 388815
Number of successful extensions: 1122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)