Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00355
(632 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008502-1|AAH08502.1| 99|Homo sapiens chromosome 4 open readi... 41 0.003
M93425-1|AAA36529.1| 780|Homo sapiens protein tyrosine phosphat... 31 4.5
D13380-1|BAA02648.1| 780|Homo sapiens protein tyrosine phosphat... 31 4.5
BC050008-1|AAH50008.2| 780|Homo sapiens protein tyrosine phosph... 31 4.5
AC006451-1|AAQ96881.1| 780|Homo sapiens unknown protein. 31 4.5
AB209524-1|BAD92761.1| 807|Homo sapiens protein tyrosine phosph... 31 4.5
BC003605-1|AAH03605.1| 368|Homo sapiens single stranded DNA bin... 30 5.9
AL161644-7|CAI23563.1| 368|Homo sapiens single stranded DNA bin... 30 5.9
AL035415-2|CAI22488.1| 368|Homo sapiens single stranded DNA bin... 30 5.9
AK124271-1|BAC85822.1| 270|Homo sapiens protein ( Homo sapiens ... 30 5.9
AF500116-1|AAM22101.1| 368|Homo sapiens single-stranded DNA-bin... 30 5.9
>BC008502-1|AAH08502.1| 99|Homo sapiens chromosome 4 open reading
frame 34 protein.
Length = 99
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +2
Query: 185 DPCECLWNHELAMRRLISLLRQ 250
DPCEC+ +HE AMRRLI+LLRQ
Sbjct: 7 DPCECVCSHEHAMRRLINLLRQ 28
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 229 LNLTASSRPSYCTESECLEQLPG 297
+NL S+ SYCT++ECL++LPG
Sbjct: 23 INLLRQSQ-SYCTDTECLQELPG 44
>M93425-1|AAA36529.1| 780|Homo sapiens protein tyrosine phosphatase
protein.
Length = 780
Score = 30.7 bits (66), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 426 PHDRDGAPPTPPRI*STLAEATCSSRVVLPP 518
P +D PP PPR S L E ++ PP
Sbjct: 327 PEKQDSPPPKPPRTRSCLVEGDAKEEILQPP 357
>D13380-1|BAA02648.1| 780|Homo sapiens protein tyrosine phosphatase
G1 protein.
Length = 780
Score = 30.7 bits (66), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 426 PHDRDGAPPTPPRI*STLAEATCSSRVVLPP 518
P +D PP PPR S L E ++ PP
Sbjct: 327 PEKQDSPPPKPPRTRSCLVEGDAKEEILQPP 357
>BC050008-1|AAH50008.2| 780|Homo sapiens protein tyrosine
phosphatase, non-receptor type 12 protein.
Length = 780
Score = 30.7 bits (66), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 426 PHDRDGAPPTPPRI*STLAEATCSSRVVLPP 518
P +D PP PPR S L E ++ PP
Sbjct: 327 PEKQDSPPPKPPRTRSCLVEGDAKEEILQPP 357
>AC006451-1|AAQ96881.1| 780|Homo sapiens unknown protein.
Length = 780
Score = 30.7 bits (66), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 426 PHDRDGAPPTPPRI*STLAEATCSSRVVLPP 518
P +D PP PPR S L E ++ PP
Sbjct: 327 PEKQDSPPPKPPRTRSCLVEGDAKEEILQPP 357
>AB209524-1|BAD92761.1| 807|Homo sapiens protein tyrosine
phosphatase, non-receptor type 12 variant protein.
Length = 807
Score = 30.7 bits (66), Expect = 4.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 426 PHDRDGAPPTPPRI*STLAEATCSSRVVLPP 518
P +D PP PPR S L E ++ PP
Sbjct: 354 PEKQDSPPPKPPRTRSCLVEGDAKEEILQPP 384
>BC003605-1|AAH03605.1| 368|Homo sapiens single stranded DNA
binding protein 3 protein.
Length = 368
Score = 30.3 bits (65), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P +QP P A P HNP G PP
Sbjct: 125 PGSQPSPHAQPPPHNPSSMMGPHSQPP 151
>AL161644-7|CAI23563.1| 368|Homo sapiens single stranded DNA
binding protein 3 protein.
Length = 368
Score = 30.3 bits (65), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P +QP P A P HNP G PP
Sbjct: 125 PGSQPSPHAQPPPHNPSSMMGPHSQPP 151
>AL035415-2|CAI22488.1| 368|Homo sapiens single stranded DNA
binding protein 3 protein.
Length = 368
Score = 30.3 bits (65), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P +QP P A P HNP G PP
Sbjct: 125 PGSQPSPHAQPPPHNPSSMMGPHSQPP 151
>AK124271-1|BAC85822.1| 270|Homo sapiens protein ( Homo sapiens
cDNA FLJ42277 fis, clone TLIVE2002338. ).
Length = 270
Score = 30.3 bits (65), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 314 DSGCGSPGNCSRHSLSVQYDGL 249
D+ PG CSRH LSV + GL
Sbjct: 237 DTNRALPGRCSRHRLSVSFQGL 258
>AF500116-1|AAM22101.1| 368|Homo sapiens single-stranded
DNA-binding protein protein.
Length = 368
Score = 30.3 bits (65), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 381 PSTQPDPDAAKPAHNPHDRDGAPPTPP 461
P +QP P A P HNP G PP
Sbjct: 125 PGSQPSPHAQPPPHNPSSMMGPHSQPP 151
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,945,335
Number of Sequences: 237096
Number of extensions: 1917777
Number of successful extensions: 5482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5457
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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