Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00355
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46996-4|CAA87095.2| 101|Caenorhabditis elegans Hypothetical pr... 37 0.010
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 35 0.056
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 35 0.056
AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical... 31 0.91
AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical... 31 0.91
AC024805-5|AAK39339.1| 494|Caenorhabditis elegans Hypothetical ... 29 3.7
AC024805-4|ABA00170.1| 318|Caenorhabditis elegans Hypothetical ... 29 3.7
AC024805-3|AAK39338.1| 801|Caenorhabditis elegans Hypothetical ... 29 3.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 4.8
AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z46996-4|CAA87095.2| 101|Caenorhabditis elegans Hypothetical
protein C34C12.4 protein.
Length = 101
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +2
Query: 185 DPCECLWNHELAMRRLISLLR 247
DPCEC ++HE AM+RL+++LR
Sbjct: 3 DPCECFFDHESAMQRLLAMLR 23
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +3
Query: 438 DGAPPTPPRI*STLAEATCSSRVVLPPLNS 527
D APP PPRI S + A SSR LPP +S
Sbjct: 265 DDAPPPPPRIASKTSVAPTSSRAPLPPSSS 294
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 34.7 bits (76), Expect = 0.056
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +3
Query: 438 DGAPPTPPRI*STLAEATCSSRVVLPPLNS 527
D APP PPRI S + A SSR LPP +S
Sbjct: 267 DDAPPPPPRIASKTSVAPTSSRAPLPPSSS 296
>AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical
protein Y39B6A.43b protein.
Length = 734
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 355 MPSSRTS**SCCQPTPAVEALVIARGIRFPCNTMALTKQ 239
+PS+ +S S P P+ A +I G+ +P NT+ LT Q
Sbjct: 82 LPSTSSS--SAAAPPPSKRARLIKDGVAYPSNTVLLTNQ 118
>AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical
protein Y39B6A.43a protein.
Length = 731
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 355 MPSSRTS**SCCQPTPAVEALVIARGIRFPCNTMALTKQ 239
+PS+ +S S P P+ A +I G+ +P NT+ LT Q
Sbjct: 79 LPSTSSS--SAAAPPPSKRARLIKDGVAYPSNTVLLTNQ 115
>AC024805-5|AAK39339.1| 494|Caenorhabditis elegans Hypothetical
protein Y51H7C.6b protein.
Length = 494
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 285 AITRASTAGVGWQQLHHDVRDDGICVSYVYDAPSTQPDPDAAKPAH 422
A+ A T VG QL D+RD G+C + DA ++ A++ H
Sbjct: 122 ALDVAKTRVVGCLQLAGDMRDLGVCAEGIDDAIRSEDFETASQHIH 167
>AC024805-4|ABA00170.1| 318|Caenorhabditis elegans Hypothetical
protein Y51H7C.6c protein.
Length = 318
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 285 AITRASTAGVGWQQLHHDVRDDGICVSYVYDAPSTQPDPDAAKPAH 422
A+ A T VG QL D+RD G+C + DA ++ A++ H
Sbjct: 122 ALDVAKTRVVGCLQLAGDMRDLGVCAEGIDDAIRSEDFETASQHIH 167
>AC024805-3|AAK39338.1| 801|Caenorhabditis elegans Hypothetical
protein Y51H7C.6a protein.
Length = 801
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 285 AITRASTAGVGWQQLHHDVRDDGICVSYVYDAPSTQPDPDAAKPAH 422
A+ A T VG QL D+RD G+C + DA ++ A++ H
Sbjct: 122 ALDVAKTRVVGCLQLAGDMRDLGVCAEGIDDAIRSEDFETASQHIH 167
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 378 APSTQPDPDAAKPAHNPHDRDGAPPTPP 461
AP P P A PA P+ + PP PP
Sbjct: 111 APPPAPYPQHAVPAPAPYQQQPPPPPPP 138
>AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical
protein Y105C5A.1 protein.
Length = 767
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 360 VSYVYDAPSTQPDPDAAKPAHNPHDRDGAPPTPP 461
+ VYD P + P + N RDG+P PP
Sbjct: 723 IPIVYDIPPSNLPPIIPDGSSNSSSRDGSPYIPP 756
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,629
Number of Sequences: 27780
Number of extensions: 285684
Number of successful extensions: 823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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