Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00355
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    32   0.36 
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    29   1.9  
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic...    28   4.5  
At5g15210.1 68418.m01782 zinc finger homeobox family protein / Z...    28   5.9  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   5.9  
At5g24620.1 68418.m02908 thaumatin-like protein, putative simila...    27   7.8  

>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 381 PSTQPDPDAAKPAHN-PHDRDGAPPTPPRI*STLAEATCSSRVVLPP 518
           P+T+P P   KP H+ P      PPTP      +   T +  V+ PP
Sbjct: 142 PTTKPPPSTPKPPHHKPPPTPCPPPTPTPTPPVVTPPTPTPPVITPP 188


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 375 DAPSTQPDPDAAKPAHNPHDRDGAPPTPP 461
           ++ ++ P P+  +P   P D D +PP PP
Sbjct: 113 ESTNSPPPPEVFEPPPPPADEDESPPAPP 141


>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
           to chromomethylase CMT2 [Arabidopsis thaliana]
           GI:14583094
          Length = 1295

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 ES*AGHAPLNLTASSRPSYCTESECLEQLPGLPQPESAGNS 327
           ES    APL+L +SSR    +E ECL  +   P PE A  S
Sbjct: 8   ESEEAQAPLDLHSSSR----SEPECLSLVLWCPNPEEAAPS 44


>At5g15210.1 68418.m01782 zinc finger homeobox family protein /
           ZF-HD homeobox family protein various predicted
           proteins, Arabidopsis thaliana
          Length = 271

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 426 PHDRDGAPPTPPRI*STLAEATCSSRVVLPPLNSSYCII 542
           PH+R   PP PP   + +           PP++SSY ++
Sbjct: 124 PHNRHQLPPPPPPHLAGIRSPDDDDSASPPPISSSYMLL 162


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 369 VYDAPSTQPDPDAAKPAHNPHDRDGAPPTPP 461
           VY  P   P P    P ++P      PP PP
Sbjct: 463 VYSPPPPPPPPPPPPPVYSPPPPSPPPPPPP 493


>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
           to thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 420

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 APSTQP--DPDAAKPAHNPHDRDGAPPTPP 461
           AP TQ   D   A P  N + +  APPTPP
Sbjct: 313 APPTQNQYDQPLAPPTQNQYGQPMAPPTPP 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,902
Number of Sequences: 28952
Number of extensions: 264708
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)