Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00354
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33)             29   2.8  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 28   3.7  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   6.5  
SB_38437| Best HMM Match : VWA (HMM E-Value=0)                         27   6.5  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33)
          Length = 663

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 165 RRHFE*RLRLNIQCRIYNV-RLRSHTYPISFILD**STSSNMGYW 296
           +R F+ RLRLNI  ++Y + R +   YP S +    S +  + YW
Sbjct: 52  KREFQERLRLNISGKVYELSRKQLAKYPNSLLS---SPAKRLSYW 93


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCR 74
           PRPS PKPT P     CR
Sbjct: 299 PRPSRPKPTLPPFAEKCR 316



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCR 74
           PRPS PKPT P     C+
Sbjct: 79  PRPSRPKPTLPPFAQKCK 96



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCR 74
           PRPS PKPT P     C+
Sbjct: 134 PRPSRPKPTLPPFAQKCK 151



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCR 74
           PRPS PKPT P     C+
Sbjct: 189 PRPSRPKPTLPPFAQKCK 206



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCR 74
           PRPS PKPT P     C+
Sbjct: 244 PRPSRPKPTLPPFAQKCK 261


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 21  PRPSEPKPTSPARG 62
           PRP+ PKPT+P +G
Sbjct: 338 PRPTPPKPTAPPKG 351


>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3445

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 21   PRPSEPKPTSPARG 62
            PRP+ PKPT+P +G
Sbjct: 3239 PRPTPPKPTAPPKG 3252


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCRPTNELWR 95
           P+ S PK T P +  PC P NE W+
Sbjct: 667 PQWSRPKVTRPCQLPPCPPPNE-WK 690


>SB_47422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 315 STPKALASNPYYWKCFTSL 259
           S  K LA+ PY+W+CF  L
Sbjct: 146 SPEKPLANVPYFWECFPFL 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,974
Number of Sequences: 59808
Number of extensions: 236302
Number of successful extensions: 632
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)