Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00354
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    27   10.0 

>AL032654-7|CAA21719.1|  219|Caenorhabditis elegans Hypothetical
           protein Y52B11A.5 protein.
          Length = 219

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCRPTNELWR 95
           P P+ P P  P RG  C     LW+
Sbjct: 29  PPPARPPPPPPPRGVKCPAGWTLWK 53


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 21  PRPSEPKPTSPARGAPCRP 77
           P PS P+P SP  G P  P
Sbjct: 281 PSPSPPRPLSPVFGQPAPP 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,902
Number of Sequences: 27780
Number of extensions: 171899
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)