Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00353
         (624 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    32   1.9  
AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    31   3.3  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 31.9 bits (69), Expect = 1.9
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 239 CGRIITCVVLCVICKYFIYLFIY--IYACIHSIVLNF 343
           C  + TC+  C+    ++Y+ +Y  IY CIH  V ++
Sbjct: 187 CIHMYTCIHRCIFIYTYVYICVYIHIYICIHVCVYSY 223


>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 248 IITC--VVLCVICKYFIYLFIYIYACIHSIVLNF 343
           + TC  V +CV     I+++I+IY CIH  V ++
Sbjct: 166 VFTCTHVYICVFIYICIHVYIHIYICIHICVYSY 199



 Score = 30.3 bits (65), Expect = 5.8
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 236 TCGRIITCVVLCVICKYFIYLFIYIYACIHSIV 334
           TC  +  CV + +    +I+++I I+ C++S +
Sbjct: 168 TCTHVYICVFIYICIHVYIHIYICIHICVYSYI 200


>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 276 YVNILFIYLYIYTH--AYIRSFLIFIVYPISHALARVC 383
           Y++I++ Y+YI+ H  AY+  F+   ++   ++ ARVC
Sbjct: 59  YIHIIYTYMYIHMHAYAYMCVFICTHMHTYVYSYARVC 96


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,350,076
Number of Sequences: 237096
Number of extensions: 1313787
Number of successful extensions: 2275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)