Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00353
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm rec...    29   3.6  
AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine re...    28   4.7  

>AF026209-13|AAB71271.2|  351|Caenorhabditis elegans Seven tm
           receptor protein 20 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 346 SFIRFLTLSRA-FVATILNLTADIIYQYCCVLHAHG 450
           S   FL L    + ATI  L+   +Y+YC + H  G
Sbjct: 97  SLTLFLVLYAVLYAATICMLSVQFVYRYCAIFHQFG 132


>AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine
           receptor, class h protein10 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 128 VFGPTRGGFTAVGVVGKLTKLDHLEEVKVVTRFP*GTCGRIIT 256
           VF      F  +G+ G   +  H E+++++  FP  TC   +T
Sbjct: 153 VFSSCTFCFLLLGITGMFDQTAHKEKLEIINEFPELTCTSAVT 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,900
Number of Sequences: 27780
Number of extensions: 214840
Number of successful extensions: 675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)