Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00353
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   0.79 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.6  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   7.4  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 387 RDKRAREREKSDKR*KLRTIECMHAYIYINK*IKYLHITHNTTHVMILP 241
           RD+R RER K  K     +  C ++  Y N    Y  + +N  ++  +P
Sbjct: 290 RDRRERERSKEPKIISSLSNSCNYSNNYYNN-NNYKKLYYNINYIEQIP 337


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 285 YLHITHNTTHVMILPQVPYGNLVT 214
           YLH+ +   HVMI   + +G L+T
Sbjct: 50  YLHLLYQDVHVMI--WIGFGFLMT 71


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 387 RDKRAREREKSDK 349
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 387 RDKRAREREKSDK 349
           RDKR RER K  K
Sbjct: 68  RDKRERERSKERK 80


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 417 YNVSSQIQYRRDKRAREREKSDK 349
           Y  +S+ ++R D+R RER K  K
Sbjct: 292 YRETSKERFR-DRRERERSKESK 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,428
Number of Sequences: 438
Number of extensions: 3029
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)