Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00353
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51300.2 68418.m06360 splicing factor-related contains simila...    29   2.5  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    29   2.5  
At4g17120.1 68417.m02578 expressed protein                             28   5.8  

>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 267 NTTHVMILPQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPXTSLNH 115
           +T H   +  +P+ N  +  T      LVN P  P    PP VG   S+ +
Sbjct: 722 STDHSQNMGNMPWANNPSVSTPDHSQGLVNAPWAPNPPMPPTVGYSQSMGN 772


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 267 NTTHVMILPQVPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPXTSLNH 115
           +T H   +  +P+ N  +  T      LVN P  P    PP VG   S+ +
Sbjct: 722 STDHSQNMGNMPWANNPSVSTPDHSQGLVNAPWAPNPPMPPTVGYSQSMGN 772


>At4g17120.1 68417.m02578 expressed protein
          Length = 1661

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +3

Query: 309  YTHAYIRSFLIFIVYPISHAL--ARVCRDDIESDC*HYISILL-RTARARQHTHKTIRA 476
            + H   R+FL FIV P+S AL    +  D I + C   + +L  RTA  R    + + A
Sbjct: 1579 FAHGVGRAFLGFIVQPVSGALDFFSLTVDGIGASCSRCLEVLSNRTALERIRNPRAVHA 1637


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,570,975
Number of Sequences: 28952
Number of extensions: 189654
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)