Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00352
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.7  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   4.8  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   6.3  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 753 GPVQMPPRGMLYIRASSPN 697
           G  ++PP   +YI   SPN
Sbjct: 99  GKAEVPPSNPIYIHPESPN 117


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 506 SDAQQMQQVLDAMFEKRSEPGEYVI 580
           S+  ++QQ++D +  K S+P + VI
Sbjct: 115 SETSKLQQLVDNIEHKLSDPNQCVI 139


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 614 IENGVFDVLVTGDD 655
           I+NGVF+V+ T  D
Sbjct: 39  IDNGVFEVVATSGD 52


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 252 EELDRVVDHVPRLLQQITYSKLQ*DLSKVIRDL-NAS 145
           E+    + HV    Q   Y  L   LSK+IRD+ NAS
Sbjct: 248 EDFQMALKHVGPSSQVADYRSLWMLLSKLIRDVGNAS 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,704
Number of Sequences: 336
Number of extensions: 4124
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)