Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00352
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun... 54 2e-08
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.57
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 29 0.57
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 4.0
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 4.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.2
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 25 9.2
>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 412
Score = 54.0 bits (124), Expect = 2e-08
Identities = 36/86 (41%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Frame = +2
Query: 509 DAQQMQQVLDAMFEKR-SEPGEYVIRQGDDGDNFYVIENGVFDVL------VTGDDRVE- 664
D + +VL+AM EKR E G VI QG GD FY++E G FDV +T ++ +
Sbjct: 148 DEEHYNEVLNAMTEKRIGEAGVAVIVQGAVGDYFYIVEQGEFDVYKRPELNITPEEVLSS 207
Query: 665 ---KVVHTYEGSGSFGELALMYNMPR 733
+ T FGELALMYN PR
Sbjct: 208 GYGNYITTISPGEYFGELALMYNAPR 233
Score = 50.0 bits (114), Expect = 4e-07
Identities = 32/87 (36%), Positives = 44/87 (50%)
Frame = +2
Query: 509 DAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEG 688
D Q Q++ DA+ + G VIRQGD G+ FY+IE+G +V+ G + VV T
Sbjct: 283 DKYQRQKIADALQTVVYQAGSIVIRQGDIGNQFYLIEDGEAEVVKNG----KGVVVTLTK 338
Query: 689 SGSFGELALMYNMPRGGICTGPDRRAL 769
FGELAL++ R R L
Sbjct: 339 GDYFGELALIHETVRNATVQAKTRLKL 365
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 0.57
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 497 VPFSDAQQMQQVLDAM-FEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTG 649
V F++ Q+ + L+AM FE +PG + D NF VI+N D+ +TG
Sbjct: 336 VEFAECQRRLKELEAMHFE---QPGSVTEKLFPDPTNFEVIDNVSIDLTLTG 384
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 29.5 bits (63), Expect = 0.57
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +1
Query: 295 LSPAHLMSP*YQTKKSRQWRALTIGANP--FSPRLMTPK----RMILTKEPLPCSPSRTH 456
L A + SP Y T+ L + +P SP +P R +++PLP SPSRT
Sbjct: 37 LVDAFMQSPSYSTQPKSAVEPLGLSFSPGYISPSSQSPHHGPVRSPSSRKPLPASPSRTR 96
Query: 457 REPVSLRRSG 486
+ + SG
Sbjct: 97 DHSLRVPVSG 106
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 660 TRSSPVTRT--SKTPFSMT*KLSPSSPCLITYSPGSDLFSNIASRT 529
T+ +P + T P K+SP++P L T + D+FS+ A T
Sbjct: 416 TQGAPPSHTYGPPPPVQPKPKISPTTPRLSTLALADDMFSSTAKET 461
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/68 (27%), Positives = 24/68 (35%)
Frame = +3
Query: 237 RGRVLHRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDS 416
RG+ Q V P DE +DE V R+ N F DPEE+
Sbjct: 8 RGKKHSAKQKEEEVNSVVSPGIAKNDEGAGNDEGAYQVNRYTNEPVQPFFGALDPEEEKY 67
Query: 417 DEGAPAVF 440
+ A F
Sbjct: 68 FQQAEQAF 75
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 204 SAGAAWGRDQLRGRVLHRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNNRRKSVF 383
S A+ G D L+ R + + +T PV P +++ +A N+RK+
Sbjct: 506 SIRASGGMDLLKSRKVSASPSVASTKTSNPPVEAPPSNNLMD-----ALASALNQRKTKV 560
Query: 384 AETYDPEEDDSD 419
A++ + +EDD +
Sbjct: 561 AQSDEEDEDDDE 572
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 288 RGPVAGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDD 413
R PV+ + S +S+ ++P +A +R+ +AE+ + E+ D
Sbjct: 171 RHPVSSKLENSELSEVDKPFIASRRSRKPVSYAESDEDEDFD 212
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 157 VPDDLREILLEFTISYLLEQPGDVINYAVEFFTGYKTT 270
+P L + + E ISY L+QP I + ++F G T
Sbjct: 752 IPYSLTDHIHEREISYRLKQPVAFIPHVAQWFQGITLT 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,708
Number of Sequences: 5004
Number of extensions: 67290
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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