Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00352
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 62 6e-10
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 50 3e-06
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684... 45 6e-05
04_04_0769 + 27957562-27957745,27958444-27958511,27958977-279590... 41 0.001
01_06_0511 + 29937167-29937264,29937362-29937577,29937938-299380... 38 0.009
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966... 38 0.012
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280... 34 0.11
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 33 0.19
06_01_1022 + 7992901-7994676 33 0.34
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 31 1.0
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 29 3.1
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 29 5.5
01_07_0314 - 42688284-42688517,42688587-42688655,42688881-426890... 29 5.5
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 28 7.2
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536... 28 9.6
08_02_1436 + 27083698-27084111,27084333-27084416,27084502-270845... 28 9.6
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796... 28 9.6
06_03_1267 - 28851286-28851306,28851452-28851520,28852031-288520... 28 9.6
03_06_0147 - 31980352-31981629 28 9.6
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +2
Query: 518 QMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDD---RVEKVVHTYEG 688
Q +LD M + G+ V++QG +G+ FYV+ +G F+VL ++ V KV+H Y
Sbjct: 498 QCHVLLDCMQRVEVKAGDIVVQQGGEGECFYVVGSGEFEVLAIQEEDGKEVTKVLHRYTA 557
Query: 689 S--GSFGELALMYNMPRGGICTGPDRRALWA 775
SFGELALMYN P LWA
Sbjct: 558 DKLSSFGELALMYNKPLQASVRAVTTGTLWA 588
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +2
Query: 518 QMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVE------KVVHT 679
Q+ Q+ D++ E G+ ++ + DD + Y+I+ G + + D + V
Sbjct: 624 QLSQLADSLVEVTFGDGQMIVDKNDDASSLYIIQRGRVKLKLAADQVAQSSREDGNYVFE 683
Query: 680 YEGSGSFGELAL 715
+ G FGE AL
Sbjct: 684 IDEGGHFGEWAL 695
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/74 (31%), Positives = 43/74 (58%)
Frame = +2
Query: 512 AQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGS 691
A+ +QQ++ + E+ PGE ++ QG D Y + +G + + G+D E+ + E
Sbjct: 425 AEFIQQIVIRLQEEFFLPGEVILEQGSAVDQLYFVCHGALEGVGIGEDGQEETILMLEPE 484
Query: 692 GSFGELALMYNMPR 733
SFGE+A++ N+P+
Sbjct: 485 SSFGEIAVLCNIPQ 498
>04_04_0016 -
22167780-22167873,22167978-22168272,22168380-22168455,
22168665-22168853,22168955-22169176,22169315-22169413,
22169502-22169582,22169753-22170060,22171611-22171950,
22172047-22172110,22172191-22172412,22172865-22173043
Length = 722
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/71 (25%), Positives = 40/71 (56%)
Frame = +2
Query: 521 MQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSF 700
+ Q++ + E+ PGE ++ QG D Y++ +G + + G+D E+++ G
Sbjct: 395 LSQIVLKLHEEFFLPGEVILEQGTVVDQIYIVAHGCLEEVANGEDGSEEIISELRPYGIV 454
Query: 701 GELALMYNMPR 733
G++A++ N+P+
Sbjct: 455 GDVAVICNIPQ 465
>04_04_0769 +
27957562-27957745,27958444-27958511,27958977-27959058,
27959193-27959239,27959349-27959474,27960439-27960526,
27960922-27961034,27961976-27962038,27962110-27962165,
27962502-27962594,27962991-27963092,27963178-27963226,
27963318-27963386,27963486-27963572
Length = 408
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +2
Query: 512 AQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTG----DDRVEKVVHT 679
+ ++++ DA+ KR EPG YV R+GD D Y+I +G +V ++R + V++
Sbjct: 46 SSSIRRIADAVLVKRYEPGGYVAREGDPVDGLYIILDGQAEVSAPANTEEENRPDYVLNK 105
Query: 680 YEGSG 694
Y+ G
Sbjct: 106 YDYFG 110
>01_06_0511 +
29937167-29937264,29937362-29937577,29937938-29938093,
29939614-29939671,29939768-29940085,29940160-29940399,
29940489-29940587,29940676-29940711,29941183-29941368,
29941442-29941709,29941805-29941911
Length = 593
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +2
Query: 530 VLDAMFEKRSE---PGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSF 700
VL + E ++E P +I + + + Y+I +G +VL T +D EK V G
Sbjct: 359 VLPLVAEMKAESFPPKADIILENEASTDCYIIVSGEVEVLTTLEDGTEKQVMRIGPRGMA 418
Query: 701 GELALMYNMPR 733
GE+ +M+N+P+
Sbjct: 419 GEIGVMFNIPQ 429
>05_04_0393 -
20895485-20895645,20895750-20896358,20896541-20896616,
20896729-20896920,20897118-20897438,20897880-20898119,
20898205-20898522,20898621-20898678,20898778-20898936,
20900090-20900308,20900400-20900614
Length = 855
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 563 PGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPR 733
P E VI Q + D+ Y++ +G +V+ + + E+VV T G FGE++ + + P+
Sbjct: 414 PKEDVIVQNEAPDDVYIVVSGEVEVIYSDGEAEERVVATLGTRGVFGEVSALSDRPQ 470
>06_01_0390 +
2802334-2802339,2802461-2802618,2802755-2802826,
2802967-2803114,2803234-2803503,2803741-2803904,
2804184-2804236,2804302-2804496,2804597-2804694,
2804787-2804891
Length = 422
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = -1
Query: 664 FDAVVSGDQDVENAVLDDVEVVAVIALSDYVLAGLGSLFEHRIQNLLHLLRVRERNSS-- 491
FD + + + N VLD ++ +A + ++ LG LF ++L+ +++ + S
Sbjct: 115 FDGIDVAGRRLANEVLDVIQKMAGLRKISFLAHSLGGLFARYAISILYSTAMKDASQSAA 174
Query: 490 --MPRTASARRALCASDLGNTAG 428
P T + + C S LG AG
Sbjct: 175 CIAPTTGGSEKLECTSGLGAIAG 197
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 294 PVAGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPA 434
P D + EE PP RR+ A + P EDD +EG PA
Sbjct: 195 PEGEASDAEENASEESPPSPPTRGRRRKRAATSDPPPEDDEEEGTPA 241
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 300 AGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPA 434
A T D DEEE A+ R+++ ++ P EDD +EG PA
Sbjct: 224 AATSDPPPEDDEEEGTPAQPRRRKRAATSDP--PPEDDEEEGTPA 266
>06_01_1022 + 7992901-7994676
Length = 591
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 563 PGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPR 733
P VI + + + Y+I +G + L T D EK V G GE+ +M+++P+
Sbjct: 372 PKANVILENETSTDCYIIISGEVEALTTLADGTEKHVKRIGPRGMAGEIGVMFSIPQ 428
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 328 QTKKSRQWRALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSLRRSGAYCC 498
+++ R R+ + G +SPR +PKR ++ P P R P R + CC
Sbjct: 131 RSRSPRYRRSPSYGRRSYSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRAALFACC 187
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 584 QGDDGDNFYVIENGVFDVLVTGDDRVEKVVHT 679
+ D GD +Y+ + +FD+L D +E VHT
Sbjct: 136 KADAGDKYYLYRHIIFDILYNKDRVIEINVHT 167
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 438 FPKSDAQRARLAEAVRGILLFRSLTRSKC 524
FP SD RA L E L + SL RSKC
Sbjct: 49 FPGSDDPRADLEECPICFLFYPSLNRSKC 77
>01_07_0314 -
42688284-42688517,42688587-42688655,42688881-42689001,
42689196-42689371,42689473-42689574,42690376-42691320
Length = 548
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 607 EVVAVIALSDYVLAGLGS--LFEHRIQNLLHLLRVRERNSSMPRTASARRALCASDLGNT 434
+ A +A D L+G + L H+ L HLL + + S+P A+A R + + LG+
Sbjct: 38 DAAAAMAAFDSALSGPDAPRLLAHQYNQLFHLLATADAD-SLPNAAAAARRVFSHMLGSG 96
Query: 433 A 431
A
Sbjct: 97 A 97
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 772 PQSAAVWARTDAAPRHVVHQGQFAKRTGTFVCVDHLFDAVVSG 644
P SAA + A+ + + Q + T ++ VDH +DAVV G
Sbjct: 24 PVSAAARLFSTASVVPSIPRPQLIRATSSYTVVDHSYDAVVVG 66
>12_02_0179 -
14952398-14952511,14953333-14953356,14953543-14953670,
14953765-14953891,14953930-14954013,14954245-14954397,
14954478-14954579,14955036-14955128,14955289-14955350,
14955395-14955522,14957053-14957291,14958040-14958471,
14958774-14958912,14960564-14960883
Length = 714
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 489 CPGPPQRDGLSVRPTWGTRQGL 424
C P VRPTW +R+GL
Sbjct: 319 CDNNPNNRNYGVRPTWNSRRGL 340
>08_02_1436 +
27083698-27084111,27084333-27084416,27084502-27084551,
27084676-27084724,27085471-27085545,27085724-27085837
Length = 261
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 564 GSDLFSNIASRTCCICCASE-NGTAVCPGPPQRDGL 460
GS S+ A R C CC E G A PPQ+ G+
Sbjct: 40 GSRALSSAARRCFCCCCRCEAAGEAGTAPPPQQRGV 75
>08_02_1247 +
25578291-25578305,25579084-25579197,25579497-25579628,
25579726-25579854,25580024-25580421,25580503-25580602,
25580734-25580793,25580881-25580967,25581058-25581186,
25581260-25581559
Length = 487
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -2
Query: 690 EPSYVWTTFSTRSSPVTRTSKTPFSMT*KLSPSSP-CLITYSPGSDLFSNIASRTCCICC 514
+PS F T S+P +S + FS+ ++ SP C + SD + ++ ++
Sbjct: 179 QPSQNLADFETLSTPSFSSSSSTFSLKHRVDSWSPRCHYNVNTSSDKYDSLNEKS----- 233
Query: 513 ASENGTAVCP 484
NG +CP
Sbjct: 234 EQYNGMIICP 243
>06_03_1267 -
28851286-28851306,28851452-28851520,28852031-28852066,
28852381-28852486,28852869-28852997,28853685-28853797,
28853907-28853993,28854106-28854543
Length = 332
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 297 VAGTPDESIISDEEEPPVARFNNRRKSVFA-ETYDPEEDDSDEGAPAVFPKSDAQ 458
VA T D E +ARF +++ A E Y+ EED+ +E + DAQ
Sbjct: 32 VAPTVDHLAAVAAEAEAMARFEEEHRALGAEEEYEEEEDELEEEEEEMEEDEDAQ 86
>03_06_0147 - 31980352-31981629
Length = 425
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 321 IISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVR 485
I+ + PP AR + V ++ +D + +EG+ AV ++A RL + VR
Sbjct: 297 ILQPSQPPPPARATTSTEIVASQQHDESGAEEEEGSRAVVAAANAP-LRLDDGVR 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,777,021
Number of Sequences: 37544
Number of extensions: 520816
Number of successful extensions: 1978
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1969
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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