Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00352
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    42   5e-06
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 527 QVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDR-VEKVVHTYEGSGSFG 703
           ++ D + E     G+Y+IRQG  GD F++I  G   V +   D   EK + T      FG
Sbjct: 231 KISDVLEETFYNNGDYIIRQGARGDTFFIISRGQVRVTIKQPDTPEEKYIRTLSKGDFFG 290

Query: 704 ELAL 715
           E AL
Sbjct: 291 EKAL 294



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 32/70 (45%)
 Frame = +2

Query: 566 GEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPRGGIC 745
           G  +IR+GD G   YV+E G  +V      R  K + T       GELA++YN  R    
Sbjct: 126 GSTIIREGDVGSIVYVMEEGKVEV-----SRDGKYLSTLAPGKVLGELAILYNCKRTATI 180

Query: 746 TGPDRRALWA 775
           T      LWA
Sbjct: 181 TAATDCQLWA 190


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 276 TTIVRGPVAGTPDESIISDEEEPPVARFNNRRK 374
           T  V  PVAG P ESI+  E +  V   N ++K
Sbjct: 507 TLRVTCPVAGYPIESIVW-ERDTRVLPINRKQK 538


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 160 PDDLREILLEFTISYLLEQPGDVINYAVEFFTG 258
           P  L + L+    S  + QPG   NY+V +  G
Sbjct: 493 PYRLNKPLMSLITSSEVRQPGKAPNYSVNWTIG 525


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 282 IVRGPVAGTPDESIISDE 335
           +V G VAG PD   + D+
Sbjct: 18  VVHGAVAGNPDAKRLYDD 35


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 282 IVRGPVAGTPDESIISDE 335
           +V G VAG PD   + D+
Sbjct: 18  VVHGAVAGNPDAKRLYDD 35


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +2

Query: 500 PFSDAQQMQQ-VLDAMFEKRSEPGEYVIRQGDD 595
           P+   QQ QQ       E+R  P E  +  G+D
Sbjct: 162 PYQQQQQQQQRQQQRQEERRLRPDEIKVEVGED 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,488
Number of Sequences: 438
Number of extensions: 4601
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)