Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00352
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 44 1e-04
At5g37500.1 68418.m04516 guard cell outward rectifying K+ channe... 40 0.001
At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1) iden... 34 0.12
At4g00210.1 68417.m00022 LOB domain protein 31 / lateral organ b... 31 1.1
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 1.5
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 30 1.5
At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel... 29 2.6
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 29 3.5
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 29 3.5
At1g51915.1 68414.m05852 cryptdin protein-related contains weak ... 29 4.6
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof... 29 4.6
At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein si... 28 6.0
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 6.0
At5g40590.1 68418.m04926 DC1 domain-containing protein predicted... 28 8.0
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/71 (28%), Positives = 40/71 (56%)
Frame = +2
Query: 521 MQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSF 700
+ Q++ + E+ PGE ++ QG D Y + +GV + + D E++V + SF
Sbjct: 412 INQIVIRLHEEFFLPGEVIMEQGSVVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSF 471
Query: 701 GELALMYNMPR 733
GE++++ N+P+
Sbjct: 472 GEISILCNIPQ 482
>At5g37500.1 68418.m04516 guard cell outward rectifying K+ channel
(GORK) identical to guard cell outward rectifying K+
channel [Arabidopsis thaliana] gi|11414742|emb|CAC17380;
member of the 1 pore, 6 transmembrane (1P/6TM) Shaker K+
channel family, PMID:11500563
Length = 820
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +2
Query: 521 MQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSF 700
+ Q++ + E+ PGE + QG+ D+ Y + G+ + LVT D E+ V SF
Sbjct: 395 INQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSF 454
Query: 701 GELALMYNM 727
G+++++ N+
Sbjct: 455 GDISIICNI 463
>At2g26650.1 68415.m03197 potassium channel protein 1 (AKT1)
identical to AKT1 [Arabidopsis thaliana]
gi|563112|gb|AAA96810; member of the 1 pore, 6
transmembrane (1P/6TM- Shaker-type) K+ channel family,
PMID:11500563
Length = 857
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 527 QVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGE 706
Q++ M + P E VI Q + +FY++ NG D LV D E +V + GE
Sbjct: 383 QLVSEMKAEYFPPKEDVILQNEAPTDFYILVNGTAD-LVDVDTGTESIVREVKAGDIIGE 441
Query: 707 LALMYNMPR 733
+ ++ P+
Sbjct: 442 IGVLCYRPQ 450
>At4g00210.1 68417.m00022 LOB domain protein 31 / lateral organ
boundaries domain protein 31 (LBD31) identical to
SP|O81322 LOB domain protein 31 {Arabidopsis thaliana}
Length = 215
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 124 EMSRPQGGRIQVPDDLREILLEFTISYLLEQPGDVINYAVEFFTGYKTTGR-RPS 285
E +P+ I+VP + ++ F + +++ GD+ A EFFT Y T G+ RPS
Sbjct: 159 EQEQPKEA-IEVPTESVDLSTFFGLENPVDEDGDLNALAREFFTKYLTGGKYRPS 212
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 267 NRTTTIVRGPVAGTPDESIISDEEE---PPVARFNNRRKSVFAETYDPEEDDSDEG 425
N TT V+ P+ P+ ++S E E PVA AE YDP D DEG
Sbjct: 147 NGTTRDVQAPIE--PERVVVSHEPEVEPEPVASIEEEDLDNVAEVYDP--SDKDEG 198
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 267 NRTTTIVRGPVAGTPDESIISDEEE---PPVARFNNRRKSVFAETYDPEEDDSDEG 425
N TT V+ P+ P+ ++S E E PVA AE YDP D DEG
Sbjct: 147 NGTTRDVQAPIE--PERVVVSHEPEVEPEPVASIEEEDLDNVAEVYDP--SDKDEG 198
>At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC1) almost identical
to cyclic nucleotide-regulated ion channel 1 pir:T51354,
GI:11357236 from [Arabidopsis thaliana]
Length = 716
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +2
Query: 524 QQVLDAMFEKRSEP-----GEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEG 688
+Q+LDA+ + R +P Y++R+GD D I G + T R + Y G
Sbjct: 492 EQLLDALCD-RLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLG 550
Query: 689 SGSF-GELALMY 721
+G F GE L +
Sbjct: 551 AGDFCGEELLTW 562
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/47 (42%), Positives = 23/47 (48%)
Frame = -2
Query: 705 SPNEPEPSYVWTTFSTRSSPVTRTSKTPFSMT*KLSPSSPCLITYSP 565
SP+ P PS T ST S P K+P T K SPS P L + P
Sbjct: 76 SPSTPIPS----TPSTPSPPPPAPKKSPPPPTPKKSPSPPSLTPFVP 118
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 703 AKRTGTFVCVDHLFDAVVSGDQDVENAVLD 614
A TF C+ HL A+ SG +DV+ VLD
Sbjct: 1899 ASEAATF-CIPHLVGALKSGVEDVQGLVLD 1927
>At1g51915.1 68414.m05852 cryptdin protein-related contains weak
similarity to Swiss-Prot:P17533 cryptdin-related protein
1C precursor (CRS1C) [Mus musculus]
Length = 67
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 603 LSPSSPCLITYSPGSDLFSNIASRTC--CICCASENGTAVCP 484
LSP PC T + D + + R C C+CCA A CP
Sbjct: 20 LSPILPCQATRAH-LDAETRMLRRVCPSCVCCAPAPRGACCP 60
>At1g32660.1 68414.m04028 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 446
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 419 VRIILFGVISLGENGFAPIVKARHWRLFFV*YYGL 315
VRI FG GE AP+ +R R F++ YY +
Sbjct: 357 VRICFFGTNKAGEIIIAPMFLSRDVRSFYIFYYNV 391
>At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]; an isoform
contains a non-consensus GA-AG intron
Length = 478
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 458 LCVRLGEHG----RGSFVRIILFGVISLGENGFAPIVKARHWRLF 336
L RLGE+ R +++ + LFG++ AP RHW +F
Sbjct: 284 LLPRLGENRGTPLRPTYIEVYLFGLLDEDAKSIAPGEFERHWGIF 328
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 750 PVQMPPRGMLYIRASSPNEPEPSYV-WTTFSTRSSPVTRTSKTPFSMT*KLSPSSPCLIT 574
P PP L + SSP P PS ++ S SP +S + LSPSSP ++
Sbjct: 55 PSSPPP---LSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLS 111
Query: 573 YSPGS 559
SP S
Sbjct: 112 LSPSS 116
>At5g40590.1 68418.m04926 DC1 domain-containing protein predicted
protein, Arabidopsis thaliana
Length = 234
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = -2
Query: 414 NHPLRGHKSRRKR--ICADC 361
NHPLRGHK K IC+ C
Sbjct: 13 NHPLRGHKCEAKDEIICSGC 32
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,284
Number of Sequences: 28952
Number of extensions: 380255
Number of successful extensions: 1357
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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