Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00351
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    26   0.31 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.8  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    22   5.0  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   5.0  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   5.0  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   5.0  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   5.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   8.7  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    21   8.7  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 247 FLPKTSPTIPQKNALATPPLIKAMLINPA 161
           FL    P +PQ   L  PP+    +INP+
Sbjct: 169 FLCNNYPPLPQVPPLPLPPIFPPTMINPS 197


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 562 PGQGTTSTSKLARALDSPDFKWNHHPGECRQK*PGRNKTHSHHAKIEL 419
           P QG       A AL SP + W     E ++   GR +T++ +  +EL
Sbjct: 214 PNQGQQPPGNTAAALPSPLYPWMRSQFERKR---GR-QTYTRYQTLEL 257


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 562 PGQGTTSTSKLARALDSPDFKWNHHPGECRQK*PGRNKTHSHHAKIEL 419
           P QG       A AL SP + W     E ++   GR +T++ +  +EL
Sbjct: 216 PNQGQQPPGNTAAALPSPLYPWMRSQFERKR---GR-QTYTRYQTLEL 259


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
          protein 18 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 97 CTPDAKKAHTHAPKAL 50
          CTP+ KK  +  P+AL
Sbjct: 51 CTPEGKKLKSTIPEAL 66


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 97  CTPDAKKAHTHAPKAL 50
           CTPD  +   H P AL
Sbjct: 56  CTPDGAELKRHLPDAL 71


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = -2

Query: 109 IMQFCTPDAKKAH----THAPKALRLKR 38
           ++++CT D KK H    +  P+ALR  R
Sbjct: 65  LVEYCTQDFKKKHKADISGNPRALRRLR 92


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = -2

Query: 109 IMQFCTPDAKKAH----THAPKALRLKR 38
           ++++CT D KK H    +  P+ALR  R
Sbjct: 65  LVEYCTQDFKKKHKADISGNPRALRRLR 92


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 247 FLPKTSPTIPQKNALATPPLIKAMLINPA 161
           FL      +PQ   L  PP+    +INP+
Sbjct: 169 FLCNNYLPLPQVPPLPLPPIFAPTMINPS 197


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 91  PDAKKAHTHAPKALRLKRPYPALSSLV 11
           PDA+KA   A   LRL+    +LS ++
Sbjct: 101 PDAEKALQRAALILRLREGMNSLSRVL 127


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 138 ELQLTTYQAGLINMAFMSGGVAS 206
           EL+      GLI  A +SGG+AS
Sbjct: 165 ELKSALNAKGLILSAAVSGGIAS 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,339
Number of Sequences: 336
Number of extensions: 4226
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)