Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00351
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05) 38 0.010
SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5) 36 0.029
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 36 0.051
SB_20394| Best HMM Match : SbmA_BacA (HMM E-Value=6.2) 36 0.051
SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.051
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034) 36 0.051
SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11) 35 0.067
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04) 32 0.47
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015) 32 0.63
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0) 31 1.1
SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046) 31 1.4
SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012) 30 1.9
SB_14951| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_8708| Best HMM Match : MFS_Mycoplasma (HMM E-Value=1.2) 30 2.5
SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038) 29 3.3
SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05) 29 4.4
SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
Length = 549
Score = 37.9 bits (84), Expect = 0.010
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKAN 687
++ WR L S+PGF+ + Y+PESPR L+ R ++A ++ +N
Sbjct: 171 VHEWRNLLLAVSIPGFVFVCFWRYIPESPRWLVTRGRLDEAQAVLNRFGSSN 222
>SB_20443| Best HMM Match : Sugar_tr (HMM E-Value=3.5)
Length = 563
Score = 36.3 bits (80), Expect = 0.029
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 18 LDKAGYGRFSRSALGACVCAFFASGVQNCIMSYVLPAARCELQLTTYQAGLI 173
+D+ GYG F L A+ A ++ I++ + PA RCE L+T+ LI
Sbjct: 56 IDRLGYGLFQIKLLLMIGFAWMADSMEITILAIMCPAIRCEWNLSTWAEALI 107
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 601 YLPESPRLLLDTNRGEKALKLIANIHKANNGKNSDFKI 714
Y+PESPR + E+AL ++ I K N G + K+
Sbjct: 305 YIPESPRFCISAGDHERALSILKTIAKDNKGTLPEGKL 342
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 35.5 bits (78), Expect = 0.051
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKANNGKNSD 705
I WR ++ + LP + ++ LPE+PR L+ R E+A ++ +N K+ D
Sbjct: 797 IRDWRWYMRISGLPSILFLVFWRLLPETPRWLIAHGRLEEARDVLIKYGSCSNTKSLD 854
>SB_20394| Best HMM Match : SbmA_BacA (HMM E-Value=6.2)
Length = 215
Score = 35.5 bits (78), Expect = 0.051
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKANNGKNSD 705
I WR + + S P F+ I++ PES R L+ R E ALK++ +N D
Sbjct: 111 IRDWRTMIRVCSTPIFLLFIFIRVFPESSRFLVTKGRIEDALKVLIKYGPKHNNNAVD 168
>SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 35.5 bits (78), Expect = 0.051
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKANNGKNSD 705
I WR + + S P F+ I++ PES R L+ R E ALK++ +N D
Sbjct: 52 IRDWRTMIRVCSTPIFLLFIFIRVFPESSRFLVTKGRIEDALKVLIKYGPKHNNNAVD 109
>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
Length = 363
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIAN 672
I WR F+ +G+ PG ++ ++ ESPR LL R ++A +++ N
Sbjct: 258 IRDWRTFMLIGAAPGLAILLFWKWIFESPRWLLTKGRLDEAHEILVN 304
>SB_37752| Best HMM Match : MFS_1 (HMM E-Value=0.11)
Length = 302
Score = 35.1 bits (77), Expect = 0.067
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKANNGKNSD 705
I WR F+ +G+ PG ++ ++ ESPR L+ R ++A +++ N + ++ D
Sbjct: 164 IRDWRTFMLIGAAPGLAILLFWKWIFESPRWLITKGRLDEAHEILVNFGSNSKEQSLD 221
>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
Length = 544
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKANNGKNS 702
I WR+ S PG + ++ +PES R LL R ++A ++ + K N + S
Sbjct: 203 IRDWRILSITTSAPGILLFLFWWLIPESVRWLLTHERSKEAEMILRKVGKFNKHEAS 259
>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
Length = 292
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANIHKAN 687
I+ WR L S G I+ ++PESPR L+ N+ ++A L+ + N
Sbjct: 109 IHEWRYQLVAVSATGLPLLIFWWFIPESPRWLIAENKLDEAHALLTKFAEKN 160
>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 308 PDYRLLLAARTINGFIIGGPATLVFTYLSDLVGVKKRQFYLSMVGMSFVXXXXXXXXXXX 487
P + L + +R I G +IGG + F +++ VGV+ R ++V ++
Sbjct: 155 PFFWLFVLSRAIVGVMIGGSSLCQFILMTEFVGVRHRNVAATLVWFAWTCAFMATPLFAY 214
Query: 488 MVIPFKIRTI 517
+ ++I TI
Sbjct: 215 FIRDWRILTI 224
>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 493
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 541 WRLFLALGSLPGFIAGIWVLYLPESPRLLLDTNRGEKALKLIANI 675
WR L L ++P I + LPESPR L+ + +A + I
Sbjct: 207 WRFMLGLAAVPSIIMFFGCVILPESPRWLISKCKYAEARAALCKI 251
>SB_14272| Best HMM Match : Sugar_tr (HMM E-Value=0.0046)
Length = 775
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFI-AGIWVLYLPESPRLLLDTNRGEKALKLI 666
I WR+ + S+PG + +W ++ P SPR L+ NR ++A ++
Sbjct: 298 IRDWRMLIVAVSIPGLLFVLLWKIF-PASPRWLIAHNRLDEAHSIL 342
>SB_53613| Best HMM Match : Sugar_tr (HMM E-Value=0.00012)
Length = 466
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLL 630
I WR L G+LP I + ++PESPR L+
Sbjct: 220 IRGWRTLLLAGTLPAIILFPFWRWIPESPRWLV 252
>SB_14951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 574 PVDCPGQGTTSTSKLARALDSP 509
P+ CPG G + T K+A LD P
Sbjct: 2 PIKCPGNGCSLTRKMAGQLDEP 23
>SB_8708| Best HMM Match : MFS_Mycoplasma (HMM E-Value=1.2)
Length = 254
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 311 DYRLLLAARTINGFIIGGPATLVFTYLSDLVG 406
+Y L + I GF+IGGPA L+ + +S +G
Sbjct: 152 EYTLNVVVMAITGFMIGGPANLISSAISADLG 183
>SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038)
Length = 459
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +3
Query: 6 FGTRLDKAGYGRFSRSALGACVCAFFASGVQNCIMSYVLPAARCELQLTT--YQAGLINM 179
+G + GYGR + + V F + Y L L T ++ GL+
Sbjct: 281 YGLVTELIGYGRLAELCVYGLVTELFGYDLVTEFFKYGLVTELFGYGLVTELFKYGLVTE 340
Query: 180 AFMSGGVASAFFWGIVGDVFG 242
F G V F +G+V ++FG
Sbjct: 341 LFGYGLVTELFGYGLVTELFG 361
>SB_58306| Best HMM Match : Sugar_tr (HMM E-Value=2.6e-05)
Length = 457
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 532 IYSWRLFLALGSLPGFIAGIWVLYLPESPRLLL 630
I +WR L + ++P F + ++PESPR LL
Sbjct: 186 IRAWRTLLLVYTVPAFAVLLCWRWIPESPRWLL 218
>SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -1
Query: 212 ECTGDTTAHKSHVDQSCLVCRQL*LTSRSRQDVRHNAVLHS*CEESAHARS*STPAEAAV 33
ECT + HV + + SRS +R +V+ S +ES H S ST E +
Sbjct: 321 ECTNNPNTPTIHVRPMSAAGEVISIYSRSSSPIRSQSVITSLQKESPHRESVSTTNETTL 380
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,171,921
Number of Sequences: 59808
Number of extensions: 563292
Number of successful extensions: 1814
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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