Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00350
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    29   0.97 
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    26   5.2  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   6.8  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   9.0  
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    25   9.0  

>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 43  GVVHVSTDSTLYSLWLNIVLDSKADILGNWIGDVTTQDNMNFKIESTQTK 192
           G++ +  D+ +    LN V+  ++DI+GN I  +  +DN    +  ++TK
Sbjct: 178 GIMELLKDNKISVAGLNAVVLGRSDIVGNPISYLLRKDNATVTVCHSKTK 227


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 2   GTRKRRGQRLGGGMA*SMSPLTARYILYGSISFWIVKLIYLGIG 133
           G+ +RRG+R+  G     +P+T  +   G  +  + K + LG+G
Sbjct: 35  GSGQRRGRRIKPGFEGGQTPITKLFPKVGHSTGHLKKPLRLGLG 78


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 355 RTDSSQLRLVDPKHNPIEDNKLLHPLDQQVD 447
           R DS  ++L+ PK N    + L+  L  Q+D
Sbjct: 606 RIDSETIKLLQPKSNSFSTSSLIQSLFLQLD 636


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 251 LFKVLYWTKNLTAVAGPGLIFVCVLSILKF 162
           L+ +L  TKNL  VAG  L F    SIL+F
Sbjct: 258 LYMLLKNTKNLALVAGKDLYFGVGGSILEF 287


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 570 GRTSGLCVLVSGICGLTTGS 511
           G T GLC L+ G+C   TGS
Sbjct: 135 GITVGLCNLICGVCVGITGS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,447
Number of Sequences: 5004
Number of extensions: 63687
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)