Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00350
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 31 1.0
07_03_0394 - 17633753-17636788 29 3.1
05_02_0021 - 5674587-5674799,5674898-5675031,5675129-5675207,567... 29 3.1
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 29 5.4
06_01_0601 + 4337575-4340149,4340566-4340978 29 5.4
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 29 5.4
04_04_0713 + 27490547-27491401 28 7.1
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 28 9.4
09_04_0417 + 17404433-17405392 28 9.4
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 124 GNWIGD-VTTQDNMNFKIESTQTKINPGPATAVRFFVQYNTLNKAL 258
G GD + D +E T+T++N A A + V+Y+T+NK +
Sbjct: 80 GKCEGDAIVVMDAFALPVEGTETRVN-AQADAYEYMVEYSTINKQI 124
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +1
Query: 340 RAIQSRTDSSQLRLVDPKHNPIEDNKLLH-PLDQQVDP*ILTRGRQKLKDRKFLLEDPGS 516
RA S+T ++R+ D LH PL+++ IL+R R +L R FL +DP
Sbjct: 79 RASNSKTCLGKVRISGTSFVSHSDATPLHYPLEKRT---ILSRARGELGLRVFLTDDPSV 135
Query: 517 SCEATDTGYENTEP*CSSRAPVAD*TRPRPTVYRSRATSLRKTREFRK 660
A ++ +++ VA P P +RA +R+ + K
Sbjct: 136 RVSAPGQEFDFISTPTTAQEQVAANAIPNP-FQETRADQVRQFQHLPK 182
>05_02_0021 -
5674587-5674799,5674898-5675031,5675129-5675207,
5675737-5675799,5676420-5676482,5676557-5676673,
5676756-5676803,5676918-5677103,5677948-5678047,
5678323-5678562,5678583-5678686
Length = 448
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 661 SIEHFGWRGIFSVVYQNQDRGLRTTILGSL 750
S+EH GW G +V+ L TT++G +
Sbjct: 198 SLEHMGWIGFRDMVFNKLKSTLTTTVIGMI 227
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 658 CGIHGFYVNWSLGFGRRSALDGSSLQQVLWTNIRALCSRIRYL 530
CG G + ++LG+ R+ DG + + ++ A CSR+ +L
Sbjct: 288 CGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHL 330
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 600 WTGLVCNRCSGRTSGLCVLVSGICGL 523
WTG+ C+ SGR +GL + S + G+
Sbjct: 58 WTGVRCDNRSGRVTGLLLSNSNLAGV 83
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 28.7 bits (61), Expect = 5.4
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 484 DRKFLLEDPGSSCEATDTGYENTEP*CSS---RAPVAD*TRPRPTVYRSRATSLRKTREF 654
++KFL+E S A D G+E+ P C+S R + PT++R S RE
Sbjct: 484 EKKFLMESMVKS--ARDAGHESRIPGCNSRLLRCHWCQLEQSAPTIHRFFLPSTTTNRE- 540
Query: 655 RKSIEHFG 678
KSIE G
Sbjct: 541 -KSIEEKG 547
>04_04_0713 + 27490547-27491401
Length = 284
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 361 RFGFESPEDRGLSRAGWGLFALQISRP 281
R GF+ P RG+ R WG + +I P
Sbjct: 110 RSGFKHPSYRGVRRRSWGKWVSEIREP 136
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 194 IFVCVLSILKFMLSCVVTSPIQFPSISALLSRTILSHREYNVL 66
I C + + K L C TSP P+I+ + + I +Y+ L
Sbjct: 748 ILTCAIQLAKLGLMCTETSPKDRPTINDVYYQIISIKEKYHAL 790
>09_04_0417 + 17404433-17405392
Length = 319
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 684 RYLLSRISESGQRASNNNPRFTPARPLP 767
RYL S +S++G A + N R P PLP
Sbjct: 99 RYLNSLVSKAGALAVSVNYRLAPEHPLP 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,274,600
Number of Sequences: 37544
Number of extensions: 438858
Number of successful extensions: 1340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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