Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00350
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)                 28   9.5  
SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_20069| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_8872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 91  NIVLDSKADILGNWIGDVTTQDNMNFKIESTQTKINPGPATAVRFFVQYNTLN 249
           NI++ +   I+GN I   TT++N N  I  T +   P P+     +  Y+ +N
Sbjct: 58  NIIIVTNITIIGNVIVSNTTKNNTNTIIIITSSSAPPSPSYYHHLYRHYHHIN 110


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 524 RPQIPDTRTQSPDVRPEHLLQTRPVQGRPSTEAERPVYVKPVNSANP 664
           +P  P  RT     R E +   RP  G P    E     +PV++ NP
Sbjct: 680 KPPEPVKRTVETAKRAEDMPPRRPSDGAPGRRPENAPQKRPVSTGNP 726


>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4634

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 40   YGVVHVSTDSTLYSLWLNIVLDSKADILGNWIGDVTTQDNMNFKIESTQTKINPG 204
            YGV  +ST +T+ ++    VL  +   LG   GDVT    + ++I    ++I+PG
Sbjct: 3031 YGVFGISTYNTINTVEEGSVLRLEVQRLGGDFGDVT----ITWRITPGNSQIHPG 3081


>SB_49249| Best HMM Match : RRM_1 (HMM E-Value=0.00042)
          Length = 792

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 502 EDPGSSCEATDTGYENTEP*CSSRAPVAD*TR---PRPTVYRSRATSLRKTREFRKSI 666
           E  GS   +    Y  +     SR+PV   +R   P  +  RSR+ S  ++R F KSI
Sbjct: 407 ESVGSDASSRSRSYSRSASRSYSRSPVRSWSRSHSPSLSPQRSRSYSRSRSRSFSKSI 464


>SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 138 RCHNARQHELQNRKHADEDQSWASNGS*IFRPIQYFEQS--PRLLAIRLNGRE 290
           R  N     ++ R+  +E++ W +NG     P +  E+S   R+  + L+GR+
Sbjct: 168 RISNGDDQTVETREDENEERKWLTNGESSSTPTEATEESFPARVEGVSLSGRK 220


>SB_20069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 527 PQIPDTRTQSPDVRPEHLLQTRPVQ 601
           P+I       PD RPEH+LQ R V+
Sbjct: 85  PEIVTGSRDDPDHRPEHVLQKRKVR 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,367,107
Number of Sequences: 59808
Number of extensions: 511017
Number of successful extensions: 1733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)