Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00350
         (768 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015681-1|AAH15681.2|  310|Homo sapiens RFFL protein protein.         32   2.0  
AY098935-1|AAM29181.1|  355|Homo sapiens FYVE-RING finger protei...    32   2.0  
AK093112-1|BAC04059.1|  363|Homo sapiens .2.2).  protein.              32   2.0  
AF434816-1|AAL30771.1|  363|Homo sapiens fring protein.                32   2.0  

>BC015681-1|AAH15681.2|  310|Homo sapiens RFFL protein protein.
          Length = 310

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 515 PVVRPQIPDTRTQSPDVRPEHLLQTRPVQGRPSTEAERPVYVKPV 649
           P   P +P +  Q+  V P  + + +   G  S + E PVY++ V
Sbjct: 118 PPTSPNLPSSSAQATSVPPAQVQENQQANGHVSQDQEEPVYLESV 162


>AY098935-1|AAM29181.1|  355|Homo sapiens FYVE-RING finger protein
           SAKURA protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 515 PVVRPQIPDTRTQSPDVRPEHLLQTRPVQGRPSTEAERPVYVKPV 649
           P   P +P +  Q+  V P  + + +   G  S + E PVY++ V
Sbjct: 171 PPTSPNLPSSSAQATSVPPAQVQENQQANGHVSQDQEEPVYLESV 215


>AK093112-1|BAC04059.1|  363|Homo sapiens .2.2).  protein.
          Length = 363

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 515 PVVRPQIPDTRTQSPDVRPEHLLQTRPVQGRPSTEAERPVYVKPV 649
           P   P +P +  Q+  V P  + + +   G  S + E PVY++ V
Sbjct: 171 PPTSPNLPSSSAQATSVPPAQVQENQQANGHVSQDQEEPVYLESV 215


>AF434816-1|AAL30771.1|  363|Homo sapiens fring protein.
          Length = 363

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 515 PVVRPQIPDTRTQSPDVRPEHLLQTRPVQGRPSTEAERPVYVKPV 649
           P   P +P +  Q+  V P  + + +   G  S + E PVY++ V
Sbjct: 171 PPTSPNLPSSSAQATSVPPAQVQENQQANGHVSQDQEEPVYLESV 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,251,722
Number of Sequences: 237096
Number of extensions: 2341775
Number of successful extensions: 5723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5721
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)