Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00350
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z81074-8|CAB03043.1|  413|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z67755-8|CAE17847.1|  209|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 322 LRALCLRAIQSRTDSSQLRLVDPKHNPIEDNKLLHPLDQQ 441
           L  +CL A    +   ++R V    NP   N+L HP+ +Q
Sbjct: 10  LAVICLGAEPELSHKERIRKVLKSWNPANSNQLFHPVSEQ 49


>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 597 TGLVCNRCSGRTSGLCVLVSGICGLTTGSW 508
           TGL    CSG T  + + V+GI GL T SW
Sbjct: 72  TGLDIGLCSGGTPYVFLPVAGIFGLGTLSW 101


>Z81074-8|CAB03043.1|  413|Caenorhabditis elegans Hypothetical
           protein F32B6.9 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
 Frame = -2

Query: 134 IQFPSISALLSRTILSHREYNVLSV-------ETWTTPYH 36
           ++FPS+ +L+   +L+ +EY +L           W TP H
Sbjct: 150 LRFPSVHSLIESGLLTEKEYQILEAMHAENESSRWITPLH 189


>Z67755-8|CAE17847.1|  209|Caenorhabditis elegans Hypothetical
           protein F54F7.8 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 101 RTILSHREYNVLSVETWTTPYHLPASDPG 15
           R+I     YN+  VE  TTP+H     PG
Sbjct: 165 RSISQTESYNLQVVENRTTPFHHTTDQPG 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,163
Number of Sequences: 27780
Number of extensions: 362572
Number of successful extensions: 1153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)