Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00350
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    33   0.28 
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDD...    29   2.6  
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDD...    29   2.6  
At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose ...    29   4.5  
At1g70390.1 68414.m08097 F-box family protein contains Pfam prof...    29   4.5  

>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 503 KTQDPVVRPQIPDTRTQSPDVRPEHLLQTRPVQG-RPSTEAERP 631
           + Q P  RP+ P+ R+  PD RP   +      G RP T   RP
Sbjct: 250 RPQTPETRPRTPEHRSAIPDTRPRTPIHESAATGRRPQTPETRP 293



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 503 KTQDPVVRPQIPDTRTQSPDVRPE-HLLQTRPVQGRPSTEAERP 631
           + Q P  RP+ PD R  + D RP   + ++   + RP T   RP
Sbjct: 215 RPQTPETRPRTPDHRYATYDNRPRTPIHESAATERRPQTPETRP 258


>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 857

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 334 CLRAIQSRTDSSQLRLVDPKHNPIEDNKLLHPLDQQVD 447
           CL+ + + ++ +  R +DPK + ++ + + +PL   VD
Sbjct: 787 CLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVD 824


>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta
           (PLDDELTA) identical to phospholipase D delta SP: Q9C5Y0
           from [Arabidopsis thaliana]; supporting cDNA
           gi|11761141|dbj|AB031047.1|
          Length = 868

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 334 CLRAIQSRTDSSQLRLVDPKHNPIEDNKLLHPLDQQVD 447
           CL+ + + ++ +  R +DPK + ++ + + +PL   VD
Sbjct: 798 CLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVD 835


>At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose
           phosphomutase, putative similar to phosphoglucomutase
           GI:534981 from [Spinacia oleracea], phosphomannomutase
           [Pseudomonas aeruginosa] GI:150994; contains InterPro
           accession IPR006352: Phosphoglucosamine mutase
          Length = 615

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = +1

Query: 289 KFAMQTTPSLPLRALCLRAIQSRTDSSQLRLVDPKHNPIEDNKLLH-----PLDQQVDP* 453
           K AMQ T +  L       +   TD  +  +VD K NPI  +KL+       L +     
Sbjct: 313 KIAMQHTRAAVLENSADLGVVFDTDVDRSGVVDNKGNPINGDKLIALMSAIVLKEHPGST 372

Query: 454 ILTRGRQKLKDRKFLLEDPGSSCEATDTGYEN 549
           ++T  R  +   +F+ E  G  C     GY N
Sbjct: 373 VVTDARTSMGLTRFITERGGRHC-LYRVGYRN 403


>At1g70390.1 68414.m08097 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 332

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 663 HRAFRVERYLLSRISESGQRASNNNPRFTPARPL 764
           H  ++ E  LLS   +   R +NN PRF  ++P+
Sbjct: 75  HTLYQEEEPLLSSCHQQPMRITNNAPRFIASQPI 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,670
Number of Sequences: 28952
Number of extensions: 345300
Number of successful extensions: 1109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)