Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00348
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    54   1e-09
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    42   5e-06
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   2.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.6  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   3.5  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   3.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.5  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   4.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   4.6  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    22   4.6  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    22   4.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.0  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 54.0 bits (124), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 510 VRKIRLNHQPF--KXXXXXXXXXXXXXXXRMFLGPKEDQFGNMLDINDNRINFVEIDSFV 683
           VR   L HQPF  K               R+FL PK D+ GN     D +I F+E+D F 
Sbjct: 472 VRFTHLQHQPFTYKITVNNQSNGNRKGTCRIFLAPKTDERGNPWLFRDQKIMFIELDKFT 531

Query: 684 YKLTGGKNTITRKSGDMNI 740
             L  G+NTITR S   ++
Sbjct: 532 VNLKQGQNTITRASSQSSV 550



 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +1

Query: 268 TALRDPLFYQLQKRLIDFVYLFKKRLPCYTKEELYFPGVKVENVVV 405
           TA+RDP+FY+    + D    +K  LP YT+ +L +PG+ V N+ V
Sbjct: 392 TAMRDPIFYRWHSYIDDIFQEYKATLPRYTENQLNYPGITVSNIEV 437


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 41.9 bits (94), Expect = 5e-06
 Identities = 20/44 (45%), Positives = 26/44 (59%)
 Frame = +1

Query: 274 LRDPLFYQLQKRLIDFVYLFKKRLPCYTKEELYFPGVKVENVVV 405
           LRDPLF++    + D    FK  LP YT  +L +PGV V N+ V
Sbjct: 394 LRDPLFFRWHAYIDDMFQEFKATLPRYTVAQLNYPGVTVTNIEV 437



 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 591 RMFLGPKEDQFGNMLDINDNRINFVEIDSFVYKLTGGKNTITRKSGDMNI 740
           R+FL P+ D+ GN     + +  F+E+D F   L  G NTITR S + ++
Sbjct: 500 RIFLAPQFDERGNPWLFRNQKDMFIELDRFAVSLKQGTNTITRHSTESSL 549



 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 26  IREAIMKGYVEM-NGMRLELNKPEDIEVLGELIYSTV 133
           I +AI  G V   NG  + L + E I+VLG +I S++
Sbjct: 315 IYDAIHSGVVRGDNGQNIPLTEFEGIDVLGNIIESSI 351


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 241 CAKCTQSYQTALRDPLFYQLQKRLIDFVYLFKKRLP 348
           C KC Q  +      + +  QKR  D+  L KK  P
Sbjct: 74  CTKCNQKQKETAEKVIRHLTQKRARDWERLSKKYDP 109


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +1

Query: 355 TKEELYFPGVKVENVVVDKLITYFDEYLMDMSNAVVLNEEEMKKASSDMNFL 510
           T   +  P   V+    D   ++   Y  + S   V    E   +SSD NFL
Sbjct: 458 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQNQVAPTGENSNSSSDFNFL 509


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 719 SGDRVFPAGQLVNEGIDFDKVYSVVIDVQHI 627
           +G R+FP  ++   G+D   +Y+V+++   I
Sbjct: 53  NGRRMFPVVKVTAAGLDPKAMYTVLLEFVQI 83


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = +1

Query: 355 TKEELYFPGVKVENVVVDKLITYFDEYLMDMSNAVVLNEEEMKKASSDMNFL 510
           T   +  P   V+    D   ++   Y  + S   V    E   +SSD NFL
Sbjct: 406 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQNQVAPTGENSNSSSDFNFL 457


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + RFQ+++ E  FH N
Sbjct: 11  QTYTRFQTLELEKEFHFN 28


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + RFQ+++ E  FH N
Sbjct: 162 QTYTRFQTLELEKEFHFN 179


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + RFQ+++ E  FH N
Sbjct: 221 QTYTRFQTLELEKEFHFN 238


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
 Frame = +1

Query: 241 CAKCTQSYQTALRDPLFY----------QLQKRLIDFVYLFKKRLPCYTKEE 366
           CAKC   ++  +R  + Y          QLQK+  D   ++KKR   Y  +E
Sbjct: 70  CAKCNDKHKEGIRKVIHYLVKQKPEWWEQLQKK-FDPQGIYKKRYQNYLDKE 120


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + R+Q+++ E  FH N
Sbjct: 228 QTYTRYQTLELEKEFHTN 245


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +1

Query: 241 CAKCTQSYQTALRDPLFYQLQKRLIDFVYLFKKRLPCYTKEELYFPGVKVENVV 402
           C+KC+Q  Q   R  + Y ++ +   +  L  K  P    +  Y   +K E +V
Sbjct: 73  CSKCSQRQQDGSRTIIRYLIKNKRDWWNELEAKYDPTGIYKNKYADELKAEGIV 126


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + R+Q+++ E  FH N
Sbjct: 10  QTYTRYQTLELEKEFHTN 27


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + R+Q+++ E  FH N
Sbjct: 188 QTYTRYQTLELEKEFHFN 205


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 241 CAKCTQSYQTA 273
           CAKCT+  +TA
Sbjct: 72  CAKCTEKQRTA 82


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + R+Q+++ E  FH N
Sbjct: 188 QTYTRYQTLELEKEFHFN 205


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + R+Q+++ E  FH N
Sbjct: 247 QTYTRYQTLELEKEFHFN 264


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + R+Q+++ E  FH N
Sbjct: 188 QTYTRYQTLELEKEFHFN 205


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 238 EVFVRFQSIKTENRFHDN 185
           + + R+Q+++ E  FH N
Sbjct: 249 QTYTRYQTLELEKEFHFN 266


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,555
Number of Sequences: 336
Number of extensions: 3525
Number of successful extensions: 38
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)