Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00348
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   2.9  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   6.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.8  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   8.8  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   8.8  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   8.8  

>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 304 KRLIDFVYLFKKRLPCYTKEELYFPGVKVENVVVDKLITYFDEYLMD 444
           +RL+D +YLF KRL    KE+++   V V+ + V K    F E  ++
Sbjct: 340 ERLLDDLYLFSKRLGGRIKEDIFCKKV-VKVIEVWKTWIAFQEETLE 385


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 203 LGLNTLESDKYFVVPSARNHTRLLCVTRYSINYKNVLSISF 325
           L L  L+  KY      RN+      +RYS+NY+ + S+ +
Sbjct: 311 LSLKNLDYSKYITFVQDRNYND----SRYSLNYEKIKSLGW 347


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +1

Query: 439 MDMSNAVVLNEEEMKKASSDMNFLYAKS-GSTISLSKYLLTLCLINQWIVS*ECFWDRKK 615
           + +++ V++NE   K A+ D +FL +     TI+L K  L   +++Q +      W R  
Sbjct: 608 LSLAHQVLMNES--KSANFDFSFLKSLDLQPTITLGKNDLLNAILSQNL------WFR-- 657

Query: 616 TNSEICWTSMTTE*TLSKSIPSFTS 690
             S   W SMTT   +S+ + +F+S
Sbjct: 658 --SLPFWKSMTTSFMMSQDVLNFSS 680


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 173 RYLLIIMKSVLGLNTLESDKYFVVPSARNHTRLLCVTRYSINYKNVLSISFTCSRNVY 346
           R  L I   +L  +  +S K  +     +  R +C     +NYK++ S++   ++NVY
Sbjct: 75  RNSLTITFPLLNSSVKQSLKKELTIGDLSQLREICPQIIELNYKSLASLALEINKNVY 132


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 519 FCVQEIHVRRCFLHFFFIQYDCVTHVHQVF 430
           + VQ +H+ + F H F + Y   T   ++F
Sbjct: 605 YLVQNVHLNKDFRHSFLLTYKTFTTPQELF 634


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 232 FVRFQSIKTENRFH-DN*KVAVSFNTLDTLVDLIYRAIDEFTEYFDVFRLVEFESHSIHL 56
           FV  + +  +N++  +N K  V  +   T    IYRA +  T +F  F    F+S  I  
Sbjct: 293 FVHAEKLTKQNKYRCENCKQLVDASKQMT----IYRAPNILTIHFKRFTFNGFQSSKISK 348

Query: 55  DISFHDCFS 29
            IS+ + F+
Sbjct: 349 QISYPESFN 357


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 388 VENVVVDKLITYFDEYLMDMSNAVVLNEEEMKKASSDMNFLYAKS 522
           +E  + D  + Y DEYL+    +    E++  K   D N +Y K+
Sbjct: 100 LEKTLKDLKLDYLDEYLIHWPVSFKTGEDKFPK-DKDGNLIYEKN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,240
Number of Sequences: 5004
Number of extensions: 59649
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)