Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00348
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.082
SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.57 
SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_2794| Best HMM Match : RNA_pol_Rpb5_C (HMM E-Value=7.2)             29   5.4  
SB_32604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           28   7.1  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_40334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1061

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = +1

Query: 358 KEELYFPGVKVENVVVDKLITYFDEYLMDMSNAVVLNEEEMKKASSDMNFLYAKSGSTI 534
           K+EL+     +  +  DK+I Y   +L+  +   +L  ++M++A +  NF+ A+SG+ I
Sbjct: 74  KKELFTQATSLYTMA-DKIIMYDQNHLLGRAYFCLLEGDKMEQADAQFNFVLAQSGNNI 131


>SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +3

Query: 282 PAILSTTKTSYRF-RLLVQETFTL--LHQRGTLFPWCES 389
           P IL++   SY   +LL+ +  T+  +H RG L PWC+S
Sbjct: 155 PLILASHNNSYDIVKLLLSKGHTIDRVHDRGCLCPWCQS 193


>SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = +2

Query: 104 VLGELIYSTVDKVDEGVKCVEAYRYLLIIMKSVLGLNTLESDKYFVVPSARNHTRLLC 277
           ++G + Y     V +G +   AY+ + ++ +  + LN L++ +Y V+P+ R    + C
Sbjct: 543 MVGNVDYVIALVVKKGSRSTWAYQVVKVMKEIDISLNCLQNCEYHVIPAHRFIVEMRC 600


>SB_2794| Best HMM Match : RNA_pol_Rpb5_C (HMM E-Value=7.2)
          Length = 371

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 136 IYRAIDEFTEYFDVFRLVEFESHSIHL 56
           +Y  ID FT+YFDV   V  +   +HL
Sbjct: 60  LYAVIDVFTQYFDVLSDVLLDDMFVHL 86


>SB_32604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +2

Query: 125 STVDKVDEGVKCVEAYRYLLIIMKSVLGLNTLESDKYFVVPSARNHTRLLCVTRYSIN 298
           S+VD   E   C+  Y    +  K V+G  T  S+  F V   RNH +LL     S+N
Sbjct: 204 SSVDGAREDFPCLRTY----LENKCVIGSMTTNSE--FEVVEQRNHAKLLLSLEKSVN 255


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/48 (27%), Positives = 30/48 (62%)
 Frame = -1

Query: 665 DKVYSVVIDVQHISELVFFRSQKHSHDTIH*FIRHNVNRYFERLMVEP 522
           D+V  V++DV++ ++ VF  S++ ++D++  F+  ++    ER +  P
Sbjct: 458 DRVALVIVDVKNEAQYVFDESRQITNDSLVDFVMKSMTSKLERRLRIP 505


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 553  LTLCLINQWIVS*ECFWDRKKTNSEICWTSMT 648
            LT+CL+  W++   C W   KT  ++ + + T
Sbjct: 1002 LTVCLLVAWVLVYFCIWRGIKTTGKVVYVTAT 1033


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,410,222
Number of Sequences: 59808
Number of extensions: 428481
Number of successful extensions: 1145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)