Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00348
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box transcr...    31   0.88 
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    30   2.0  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    30   2.0  
Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF025459-2|AAB70985.1|  252|Caenorhabditis elegans Mesodermal li...    29   4.7  
U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U64834-3|AAB04824.1|  437|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z29443-9|CAA82575.2|  292|Caenorhabditis elegans Hypothetical
           protein T07C4.6 protein.
          Length = 292

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 11/36 (30%), Positives = 25/36 (69%)
 Frame = -1

Query: 719 SGDRVFPAGQLVNEGIDFDKVYSVVIDVQHISELVF 612
           +G ++FP  + + EG+D +K+Y++++ +Q + E  F
Sbjct: 31  NGRKLFPKLEYIVEGLDENKLYAIMLQLQPVGESRF 66


>AB019521-1|BAC66463.1|  292|Caenorhabditis elegans T-box
           transcription factor TBX-9 protein.
          Length = 292

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 11/36 (30%), Positives = 25/36 (69%)
 Frame = -1

Query: 719 SGDRVFPAGQLVNEGIDFDKVYSVVIDVQHISELVF 612
           +G ++FP  + + EG+D +K+Y++++ +Q + E  F
Sbjct: 31  NGRKLFPKLEYIVEGLDENKLYAIMLQLQPVGESRF 66


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +2

Query: 29   REAIMKGYVEMNGMRLELNKPEDIEVLGELI---YSTVDKVDEGVKCVEA-YRYLLIIMK 196
            REAI  GY E   +   + +  D +V+ + +    + +DK D  +K V+A Y + +  +K
Sbjct: 1077 REAIQHGYTETETLEKRVRQASDRDVMRKSLGEWKAALDKCDAQIKSVKAEYDHAIEQIK 1136

Query: 197  SVLGLNTLESDKYFVVPSA 253
            +  G+ T+       +PSA
Sbjct: 1137 N--GVKTMSQTLDIKLPSA 1153


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +2

Query: 29   REAIMKGYVEMNGMRLELNKPEDIEVLGELI---YSTVDKVDEGVKCVEA-YRYLLIIMK 196
            REAI  GY E   +   + +  D +V+ + +    + +DK D  +K V+A Y + +  +K
Sbjct: 1077 REAIQHGYTETETLEKRVRQASDRDVMRKSLGEWKAALDKCDAQIKSVKAEYDHAIEQIK 1136

Query: 197  SVLGLNTLESDKYFVVPSA 253
            +  G+ T+       +PSA
Sbjct: 1137 N--GVKTMSQTLDIKLPSA 1153


>Z82053-10|CAB04838.2|  278|Caenorhabditis elegans Hypothetical
           protein T26E3.8 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 14  YETIIREAIMKGYVEMNGMRLELNKPEDIEVLGELIYSTVDKVDEGVKCVEAYRY 178
           ++T ++E   + Y+  +   ++++  + +  +G  I    DK+    KCV+ YRY
Sbjct: 53  WKTKMKEKCFRLYIVASADHIKISMADRMFYIGNNIGKFRDKISYIFKCVKVYRY 107


>AF025459-2|AAB70985.1|  252|Caenorhabditis elegans Mesodermal
           lineage specificationprotein 1 protein.
          Length = 252

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 719 SGDRVFPAGQLVNEGIDFDKVYSVVIDVQHISELVFFRSQKH 594
           SG R+FP   ++  G+D  K Y V++D++ I E+  FR   H
Sbjct: 56  SGRRMFPTLSVIIAGLDPVKSYVVMVDLECI-EMKRFRYSFH 96


>U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical
           protein T16A1.8 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 130 RAIDEFTEYFDVFRLVEFESHSIHL-DISFHDCF 32
           R ++E  EY + FR+V  E HS  + DI  ++ F
Sbjct: 132 RMLEERYEYIEEFRIVNLEIHSAEIQDIPLYEMF 165


>U64834-3|AAB04824.1|  437|Caenorhabditis elegans Hypothetical
           protein F54D11.1 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 130 RAIDEFTEYFDVFRLVEFESHSIHLDISFHDCFSDNRFI 14
           R +   T+YFDVFR  + + ++  LD+   D    + ++
Sbjct: 114 RQVARLTDYFDVFRTTDSDGNNTGLDLYTVDQVEHSNYV 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,726
Number of Sequences: 27780
Number of extensions: 329938
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)